View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_high_80 (Length: 251)
Name: NF2014_high_80
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_high_80 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 17 - 232
Target Start/End: Complemental strand, 16383149 - 16382934
Alignment:
| Q |
17 |
agattgtgatatgaattgtaatgattcatcatcagccaaacaatccatgtgcttttttcttgatcctaaaatatctcaagatcttgcttttgtccaattc |
116 |
Q |
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| T |
16383149 |
agattgtgatatgaattgtaatgattcatcatcagccaaacaatccatgtgcttttttcttgatcctaaaatatctcaagatcttgcttttgtccaattc |
16383050 |
T |
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| Q |
117 |
ccacaaatgtttcacaacattagcaagaaagacatatataatagtgaggctaggaatgcttttacggtatgtcaccaaaatttcatgctctttacctttt |
216 |
Q |
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| T |
16383049 |
cctcaaatgtttcacaacattagcaagaaagacatatataatagtgaggctaggaatgcttttacggtatgtcaccaaaatttcaagctctttagatttt |
16382950 |
T |
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| Q |
217 |
atccattcatttttgt |
232 |
Q |
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| T |
16382949 |
attcattcatttttgt |
16382934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 17 - 195
Target Start/End: Complemental strand, 17582056 - 17581878
Alignment:
| Q |
17 |
agattgtgatatgaattgtaatgattcatcatcagccaaacaatccatgtgcttttttcttgatcctaaaatatctcaagatcttgcttttgtccaattc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||| |
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| T |
17582056 |
agattgtgatatgaattgtaatgattcatcatcagccaaacaatccatgtgcttttttcttgatcctgaaacctccaaagatcttgcttttgtccaattc |
17581957 |
T |
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| Q |
117 |
ccacaaatgtttcacaacattagcaagaaagacatatataatagtgaggctaggaatgcttttacggtatgtcaccaaa |
195 |
Q |
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| T |
17581956 |
cctcaaatgtttcacaacctcagcaagaaagatatatatgatagtcaggctaggaatgcttttacggtatgtcaccaaa |
17581878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 21 - 185
Target Start/End: Original strand, 271624 - 271788
Alignment:
| Q |
21 |
tgtgatatgaattgtaatgattcatcatcagccaaacaatccatgtgcttttttcttgatcctaaaatatctcaagatcttgcttttgtccaattcccac |
120 |
Q |
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||||||||| |||||||||| |||| |||||||||||| ||||||| || ||||||||||| ||| ||| || || |||| ||||| |||||||| | |
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| T |
271624 |
tgtgatatgtattgtaatgacccatcttcagccaaacaagccatgtgtttctttcttgatccagaaacctctaaatatattgcatttgttcaattccctc |
271723 |
T |
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| Q |
121 |
aaatgtttcacaacattagcaagaaagacatatataatagtgaggctaggaatgcttttacggta |
185 |
Q |
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| T |
271724 |
aaatgtttcacaaccttagcaaaaaagacatctatgataatcaatctaggactgcttttaaggta |
271788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 15541 - 15756
Alignment:
| Q |
17 |
agattgtgatatgaattgtaatgattcatcatcagccaaacaatccatgtgcttttttcttgatcctaaaatatctcaagatcttgcttttgtccaattc |
116 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||| ||| ||||| |||||||||| |||||| |
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| T |
15541 |
agattgtgatatgaattgtaatgatgcatcatcagccaaacaatctatgtgcttttttcttgatcctgaaacctctaaagatgttgcttttgttcaattc |
15640 |
T |
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| Q |
117 |
ccacaaatgtttcacaacattagcaagaaagacatatataatagtgaggctaggaatgcttttacggtatgtcaccaaaatttcatgctctttacctttt |
216 |
Q |
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|| ||||||||||||||| |||||||||||||||||||| ||||| || |||||| ||||||||||||||||||||||||||||| |||| | ||| |
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| T |
15641 |
cctcaaatgtttcacaaccttagcaagaaagacatatatgatagtcagactaggactgcttttacggtatgtcaccaaaatttcaacctctaagctcttt |
15740 |
T |
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| Q |
217 |
atccattcatttttgt |
232 |
Q |
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|||||||||||||||| |
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| T |
15741 |
atccattcatttttgt |
15756 |
T |
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