View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_high_81 (Length: 250)
Name: NF2014_high_81
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_high_81 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 1354297 - 1354059
Alignment:
| Q |
13 |
aatattggcatatagttggggacgatatttttagtcttgtcaaatcggccttccaccacttataaacattttaaactgatcagcctctgcactattgtct |
112 |
Q |
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| T |
1354297 |
aatattggcatatagttggggacgatatttttagtcttgtcaaatcggccttccaccacttataaacattttaaactgatcagcctctgcactattgtct |
1354198 |
T |
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| Q |
113 |
acaagattatcactaaagtcttactccatcgcttaagaccaattcttgatactattattggtctc-accaaagcaactttctgccaggcagaagcacttc |
211 |
Q |
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| T |
1354197 |
acaagattatcactaaagtcttactccatcttttaagaccgattcttgatattattattggtctctaccaaagcaactttcttccaggcagaagcacttc |
1354098 |
T |
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| Q |
212 |
tgacaatgccattgttttgcaggaaatcttttattttat |
250 |
Q |
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| T |
1354097 |
tgacaatgccattgttttgcaggaaatcttttattttat |
1354059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 110 - 236
Target Start/End: Original strand, 26791060 - 26791187
Alignment:
| Q |
110 |
tctacaagattatcactaaagtcttactccatcgcttaagaccaattcttgatactattattggt-ctcaccaaagcaactttctgccaggcagaagcac |
208 |
Q |
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| T |
26791060 |
tctacaaaattatcactaaagtccttgtccatcgcctcagacctatccttaataatattattggtccttaccaaagtagtttcctgcctggtaggagcac |
26791159 |
T |
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| Q |
209 |
ttctgacaatgccattgttttgcaggaa |
236 |
Q |
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| T |
26791160 |
cactgacaatgccattgttttgcaggaa |
26791187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 238
Target Start/End: Complemental strand, 35063408 - 35063239
Alignment:
| Q |
70 |
acttataaacattttaaactgatcagcctctgcactattgtctacaagattatcactaaagtcttactccatcgcttaagaccaattcttgatactatta |
169 |
Q |
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| T |
35063408 |
acttacaaagattttagaccgatcagcctttgcaatattgtctacaaagttattatcaaagttttagtccaccgactaagaccgatgctttatactatta |
35063309 |
T |
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| Q |
170 |
ttggtctc-accaaagcaactttctgccaggcagaagcacttctgacaatgccattgttttgcaggaaat |
238 |
Q |
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| T |
35063308 |
ttggaccctaccaaagcatttttttgccaggtaagggaacttcagataatgccattgttttgcaagaaat |
35063239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 238
Target Start/End: Complemental strand, 23620982 - 23620900
Alignment:
| Q |
157 |
cttgatactattattggtctc-accaaagcaactttctgccaggcagaagcacttctgacaatgccattgttttgcaggaaat |
238 |
Q |
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| T |
23620982 |
cttgatactattattggtccctaccaaagcggttttctgcaaggtagaggcacttttgacaactctattgttttgcaggaaat |
23620900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 23944826 - 23944886
Alignment:
| Q |
178 |
accaaagcaactttctgccaggcagaagcacttctgacaatgccattgttttgcaggaaat |
238 |
Q |
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| T |
23944826 |
accaaagcagctttctgcctggtaggggaacttctgataattccattgttttgcaggaaat |
23944886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 33803786 - 33803846
Alignment:
| Q |
178 |
accaaagcaactttctgccaggcagaagcacttctgacaatgccattgttttgcaggaaat |
238 |
Q |
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| T |
33803786 |
accaaagcagctttctgcctggtaggggaacttctgataattccattgttttgcaggaaat |
33803846 |
T |
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