View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2014_high_92 (Length: 242)
Name: NF2014_high_92
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_high_92 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 50062241 - 50062018
Alignment:
| Q |
1 |
tcattcgaagccatggtaatcagggaaactggctaccttccagatacacaagtaatgagtcagttgaactgaagacccaaaatgatgttgtacggttctc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50062241 |
tcattcgaagccatggtaatcagggaaactggctaccttccagatacacaagtaatgagtcagttgaactgaagacccaaaatgatgttgtacggttctc |
50062142 |
T |
|
| Q |
101 |
gctatacaagcctgatgatattggttctgcgaataagaaccagaatnnnnnnnnnnnntcaagaaaggccaagctaaatgagctcagattctatcgtttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
50062141 |
gctatacaagcctgatgatattggttctgcgaataagaaccagaataaaaagaaaaaatcaagaaaggccaagctaaatgagctcagattctttcgtttg |
50062042 |
T |
|
| Q |
201 |
aaggcaaaacaaaagatgtattct |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
50062041 |
aaggcaaaacaaaagatgtattct |
50062018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 44141664 - 44141440
Alignment:
| Q |
1 |
tcattcgaagccatggtaatcagggaaactggctaccttccagatacacaagtaatgagtcagttgaactgaagacccaaaatgatgttgtacggttctc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44141664 |
tcattcgaagccatggtaatcagggaaactggctaccttccagatacacaagtaatgagtcagttgaactgaagacccaaaatgatgttgtacggttctc |
44141565 |
T |
|
| Q |
101 |
gctatacaagcctgatgatattggttctgcgaataagaaccagaat-nnnnnnnnnnnntcaagaaaggccaagctaaatgagctcagattctatcgttt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
44141564 |
gctatacaagcctgatgatattggttctgcgaataagaaccagaataaaaagaaaaaaatcaagaaaggccaagctaaatgagctcagattctttcgttt |
44141465 |
T |
|
| Q |
200 |
gaaggcaaaacaaaagatgtattct |
224 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
44141464 |
gaaggcaaaacaaaagatgtattct |
44141440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University