View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_high_93 (Length: 241)
Name: NF2014_high_93
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_high_93 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 36467202 - 36466986
Alignment:
| Q |
1 |
aatgggctataacattatagtatccttgttagccatagcccttttgttagattttaatgaacaattaactcattttagttcttagctttgaaagtatata |
100 |
Q |
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| T |
36467202 |
aatgggctataacattatagtatccttgttagccatagcccttttgttagattttaatgaacaattaactcattttagttcttagctttgaaagtatata |
36467103 |
T |
|
| Q |
101 |
caaatgttagattgtatcttatggatatgggggccatggtacatttgtagttaggcctactttatttaacaaaaaatccacctgctatctattataattg |
200 |
Q |
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| T |
36467102 |
caaatgttagattgtatcttatggatatgggggccatggtacatttgtagttaggcctactttatttaacaaaaaatccacctgctatctattataattg |
36467003 |
T |
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| Q |
201 |
tttgatcacgcatatat |
217 |
Q |
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||||||||||||||||| |
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| T |
36467002 |
tttgatcacgcatatat |
36466986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 112; Significance: 9e-57; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 5 - 208
Target Start/End: Complemental strand, 41467284 - 41467083
Alignment:
| Q |
5 |
ggctataacattatagtatccttgttagccatagcccttttgttagattttaatgaacaattaactcattttagttcttagctttgaaagtatatacaaa |
104 |
Q |
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|||||||| ||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||| |||||| |||| ||||||||||||| |||| |
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| T |
41467284 |
ggctataaaattatagtatccttgttagccat-gaccttttgttaggttttaatgaacaattaactcatgttagttattagttttgaaagtatattcaaa |
41467186 |
T |
|
| Q |
105 |
tgttagattgtatcttatggatatgggggccatggtacatttgtagttaggcctactttatttaacaaaaaatccacctgctatctattataattgtttg |
204 |
Q |
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| T |
41467185 |
tgttagattgtatattatggacat-ggggccatgttacatttgtatctaggcctactttatttaactaaatgttcacttgctatctattatgtttgtttg |
41467087 |
T |
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| Q |
205 |
atca |
208 |
Q |
| |
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|||| |
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| T |
41467086 |
atca |
41467083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 41703833 - 41703942
Alignment:
| Q |
8 |
tataacattatagtatccttgttagccatagcccttttgttagattttaatgaacaattaactcattttagttcttagctttgaaagtat-atacaaatg |
106 |
Q |
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||||||||||||| |||||||||||| | || | |||| |||| |||||||||||||||||||||| ||||||||||| ||||||||||| ||||| ||| |
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| T |
41703833 |
tataacattataggatccttgttagcta-agacgtttttttaggttttaatgaacaattaactcatgttagttcttagttttgaaagtataatacagatg |
41703931 |
T |
|
| Q |
107 |
ttagattgtat |
117 |
Q |
| |
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|||| |||||| |
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| T |
41703932 |
ttagcttgtat |
41703942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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