View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_low_1 (Length: 809)
Name: NF2014_low_1
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_low_1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 526; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 216 - 804
Target Start/End: Complemental strand, 697169 - 696575
Alignment:
| Q |
216 |
ctcccaatcgcatccattccctcactataccacaaaatcttgannnnnnnnnn------gtcttaaatcttaatttactagcacaaaactaacatataaa |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
697169 |
ctcccaatcgcatccattccctcactataccacaaaatcttgattttttttttttttttgtcttaaatcttaatttactagcacaaaactaacatataaa |
697070 |
T |
|
| Q |
310 |
attgaatacattgtttcatgcccaattttttctttcctttcaaatgtaataaaatataaaaatggaatttttctagtttcataaaacatttctaaaccat |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
697069 |
attgaatacattgtttcatgcccaattttttctttcctttcaaatgtaataaaatataaaaatggaatttttatagtttcataaaacatttctaaaccat |
696970 |
T |
|
| Q |
410 |
taagcagcaagatttctctaattctccaattgggtcttcataatcagagataataattaataatcattctcccaaaattttattttatacccctttcaaa |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
696969 |
taagcagcaagatttctctaattctccaattgggtcttcataatcagagttaataattaataatcattctcccaaaattttattttatacccctttcaaa |
696870 |
T |
|
| Q |
510 |
agttttgatttgtttatgataaacatatgttctttagttgatctaatagtgaaaacaatctgacccatgtgagaaagtaacatctgcatgatacacaaat |
609 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
696869 |
agttttgatttgtttatgataaacatatgttctttagttgatctaatggtgaaaacaatctgacccatgtgagaaagtaacatctgcatgatacacaaat |
696770 |
T |
|
| Q |
610 |
ttggctatttgtgcatgctaaataattgtacttcaaagactgtagcacaaactcatgtatggtgcacaataattgtactacaaaagagtctcgaatgtga |
709 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
696769 |
ttggctatttgtgcatgctaaataattgtacttcaaagactgtagcacaaactcatgtatggtgcacaataattgtactacaaaagagtctcgaatgtga |
696670 |
T |
|
| Q |
710 |
gcgtacttatgtctgtagtttaactgaccattacttggaagggaagcttttgtggcccttggttgaattgagtttggtttaacacaggttctgct |
804 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
696669 |
gcgtacttatgtctgtagtttaactgaccattacttggaagggaagcttttgtggcccttggttgaattgagtttggtttaacacaggttttgct |
696575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 216 - 804
Target Start/End: Complemental strand, 765467 - 764873
Alignment:
| Q |
216 |
ctcccaatcgcatccattccctcactataccacaaaatcttgannnnnnnnnn------gtcttaaatcttaatttactagcacaaaactaacatataaa |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
765467 |
ctcccaatcgcatccattccctcactataccacaaaatcttgattttttttttttttttgtcttaaatcttaatttactagcacaaaactaacatataaa |
765368 |
T |
|
| Q |
310 |
attgaatacattgtttcatgcccaattttttctttcctttcaaatgtaataaaatataaaaatggaatttttctagtttcataaaacatttctaaaccat |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
765367 |
attgaatacattgtttcatgcccaattttttctttcctttcaaatgtaataaaatataaaaatggaatttttatagtttcataaaacatttctaaaccat |
765268 |
T |
|
| Q |
410 |
taagcagcaagatttctctaattctccaattgggtcttcataatcagagataataattaataatcattctcccaaaattttattttatacccctttcaaa |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
765267 |
taagcagcaagatttctctaattctccaattgggtcttcataatcagagttaataattaataatcattctcccaaaattttattttatacccctttcaaa |
765168 |
T |
|
| Q |
510 |
agttttgatttgtttatgataaacatatgttctttagttgatctaatagtgaaaacaatctgacccatgtgagaaagtaacatctgcatgatacacaaat |
609 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
765167 |
agttttgatttgtttatgataaacatatgttctttagttgatctaatggtgaaaacaatctgacccatgtgagaaagtaacatctgcatgatacacaaat |
765068 |
T |
|
| Q |
610 |
ttggctatttgtgcatgctaaataattgtacttcaaagactgtagcacaaactcatgtatggtgcacaataattgtactacaaaagagtctcgaatgtga |
709 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
765067 |
ttggctatttgtgcatgctaaataattgtacttcaaagactgtagcacaaactcatgtatggtgcacaataattgtactacaaaagagtctcgaatgtga |
764968 |
T |
|
| Q |
710 |
gcgtacttatgtctgtagtttaactgaccattacttggaagggaagcttttgtggcccttggttgaattgagtttggtttaacacaggttctgct |
804 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
764967 |
gcgtacttatgtctgtagtttaactgaccattacttggaagggaagcttttgtggcccttggttgaattgagtttggtttaacacaggttttgct |
764873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 90 - 215
Target Start/End: Complemental strand, 698000 - 697875
Alignment:
| Q |
90 |
ttgatcatgagtgcaatcaaatcagcatgatgcataacagtctattgcttaaataatgaaaataacaatattcagccttgtactactatagtttgatttc |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
698000 |
ttgatcatgagtgcaatcaaatcagcatgatgcataacagtctattgcttaaataatgaaaataacaatattcagccttgtactactatagtttgatttc |
697901 |
T |
|
| Q |
190 |
cttctaaccagacaaaaaattatttc |
215 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
697900 |
cttctaaccagacaaaaaattatttc |
697875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 90 - 215
Target Start/End: Complemental strand, 766298 - 766173
Alignment:
| Q |
90 |
ttgatcatgagtgcaatcaaatcagcatgatgcataacagtctattgcttaaataatgaaaataacaatattcagccttgtactactatagtttgatttc |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
766298 |
ttgatcatgagtgcaatcaaatcagcatgatgcataacagtctattgcttaaataatgaaaataacaatattcagccttgtactactatagtttgatttc |
766199 |
T |
|
| Q |
190 |
cttctaaccagacaaaaaattatttc |
215 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
766198 |
cttctaaccagacaaaaaattatttc |
766173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 698047 - 697998
Alignment:
| Q |
17 |
aagaatgattcttttgattgatcagaatgaaagtatatactcagattttg |
66 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
698047 |
aagaatgattcttttgattgatcagaatgaaagtatatactcagattttg |
697998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 766345 - 766296
Alignment:
| Q |
17 |
aagaatgattcttttgattgatcagaatgaaagtatatactcagattttg |
66 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
766345 |
aagaatgattcttttgattgatcagaatgaaagtatatactcagattttg |
766296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 8e-20; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 36963894 - 36963944
Alignment:
| Q |
17 |
aagaatgattcttttgattgatcagaatgaaagtatatactcagattttgt |
67 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36963894 |
aagaatgattcttttgattgatcagaatgaaagtatatactcagattttgt |
36963944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 755 - 804
Target Start/End: Original strand, 36985029 - 36985078
Alignment:
| Q |
755 |
gcttttgtggcccttggttgaattgagtttggtttaacacaggttctgct |
804 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
36985029 |
gcttttgtggcccttggttgaattgagtttggtttaacacaggttttgct |
36985078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 755 - 804
Target Start/End: Original strand, 37010468 - 37010517
Alignment:
| Q |
755 |
gcttttgtggcccttggttgaattgagtttggtttaacacaggttctgct |
804 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37010468 |
gcttttgtggcccttggttgaattgagtttggtttaacacaggttttgct |
37010517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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