View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_low_10 (Length: 499)
Name: NF2014_low_10
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 15 - 481
Target Start/End: Original strand, 50554379 - 50554880
Alignment:
| Q |
15 |
caaagggacagcaagtggttcatcggatccatccgatgaagataatgaatcaggtccttgtgaacaaattacaaatccagttgatatgaaacgccaaaga |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50554379 |
caaagggacagcaagtggttcatcggatccatccgatgaagataatgaatcaggtccttgtgaacaaattacaaatccagttgatatgaaacgccaaaga |
50554478 |
T |
|
| Q |
115 |
aggtatttccgtctaactt----------------cttattatatgtggttttcaaattatgatataataatgattcatgacatggtttcaggaaggatt |
198 |
Q |
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||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50554479 |
aggtatttccgtctaactttaaatacaacacttttcttattatatttggttttcaaattatgatataataatgattcatgacatggtttcaggaaggatt |
50554578 |
T |
|
| Q |
199 |
ctaattgcgagtcagccaggaggtcaaggtggagaaaacaagcgcatttgtctgaacttgaggctcaggtaactagtcaatgttttggagcataatcttt |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50554579 |
ctaattgcgagtcagccaggaggtcaaggtggagaaaacaagcgcatttgtctgaacttgaggctcaggtaactagtcaatgttttggagcataatcttt |
50554678 |
T |
|
| Q |
299 |
tgtg-------------------agcataagtagtcatcactttcttcacatttgaattttgatatctcaggttgaaaaactgaaactggaaaatgcaac |
379 |
Q |
| |
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|||| ||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
50554679 |
tgtgagatgtataacagctaaacagcataagtagtcatcattttcttcccatttgaattttgatctctcaggttgaaaaactgaaactggaaaatgcaac |
50554778 |
T |
|
| Q |
380 |
actatataaacagtttacggataccagtcaacaatttcatgaggctgatacaaataaccgagtgctaaaatcagatgtagaagctttgagagctaaggta |
479 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
50554779 |
actatataaacagtttactgataccagtcaacaatttcatgaggctgatacaaataaccgagtgctaaaatcagatgttgaagctttgagagctaaggta |
50554878 |
T |
|
| Q |
480 |
ta |
481 |
Q |
| |
|
|| |
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|
| T |
50554879 |
ta |
50554880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 305 - 481
Target Start/End: Original strand, 50817326 - 50817502
Alignment:
| Q |
305 |
cataagtagtcatcactttcttcacatttgaattttgatatctcaggttgaaaaactgaaactggaaaatgcaacactatataaacagtttacggatacc |
404 |
Q |
| |
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|||||||||| |||| ||||||| ||||||||||||||| ||| |||||| |||||||||||||||||||||||| ||||| ||||||||||||||| | |
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| T |
50817326 |
cataagtagtgatcattttcttcccatttgaattttgatttcttaggttggaaaactgaaactggaaaatgcaaccctatacaaacagtttacggatgct |
50817425 |
T |
|
| Q |
405 |
agtcaacaatttcatgaggctgatacaaataaccgagtgctaaaatcagatgtagaagctttgagagctaaggtata |
481 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
50817426 |
agtcaacaatttcacgaggctgatacaaataaccaagtgctaaaatcagatgtagaagctttgagagctaaggtata |
50817502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 305 - 481
Target Start/End: Complemental strand, 50858538 - 50858362
Alignment:
| Q |
305 |
cataagtagtcatcactttcttcacatttgaattttgatatctcaggttgaaaaactgaaactggaaaatgcaacactatataaacagtttacggatacc |
404 |
Q |
| |
|
|||||||||| |||| ||||||| ||||||||||||||| ||| |||||| |||||||||||||||||||||||| ||||| ||||||||||||||| | |
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|
| T |
50858538 |
cataagtagtgatcattttcttcccatttgaattttgatttcttaggttggaaaactgaaactggaaaatgcaaccctatacaaacagtttacggatgct |
50858439 |
T |
|
| Q |
405 |
agtcaacaatttcatgaggctgatacaaataaccgagtgctaaaatcagatgtagaagctttgagagctaaggtata |
481 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50858438 |
agtcaacaatttcacgaggctgatacaaataaccaagtgctaaaatcagatgtagaagctttgagagctaaggtata |
50858362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 166 - 287
Target Start/End: Original strand, 50816972 - 50817093
Alignment:
| Q |
166 |
ataatgattcatgacatggtttcaggaaggattctaattgcgagtcagccaggaggtcaaggtggagaaaacaagcgcatttgtctgaacttgaggctca |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||| | ||||||||||||| |||||| ||||||||||||||||||||| |||||||||| |||| |
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| T |
50816972 |
ataatgattcatgacatggtttcaggaaggtttcaaatcccaagtcagccaggagatcaaggcggagaaaacaagcgcatttgtttgaacttgagtctca |
50817071 |
T |
|
| Q |
266 |
ggtaactagtcaatgttttgga |
287 |
Q |
| |
|
|||||||| ||||||||||||| |
|
|
| T |
50817072 |
ggtaactaatcaatgttttgga |
50817093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 166 - 287
Target Start/End: Complemental strand, 50858892 - 50858771
Alignment:
| Q |
166 |
ataatgattcatgacatggtttcaggaaggattctaattgcgagtcagccaggaggtcaaggtggagaaaacaagcgcatttgtctgaacttgaggctca |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||| | ||||||||||||| |||||| ||||||||||||||||||||| |||||||||| |||| |
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|
| T |
50858892 |
ataatgattcatgacatggtttcaggaaggtttcaaatcccaagtcagccaggagatcaaggcggagaaaacaagcgcatttgtttgaacttgagtctca |
50858793 |
T |
|
| Q |
266 |
ggtaactagtcaatgttttgga |
287 |
Q |
| |
|
|||||||| ||||||||||||| |
|
|
| T |
50858792 |
ggtaactaatcaatgttttgga |
50858771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 349 - 482
Target Start/End: Complemental strand, 1130656 - 1130523
Alignment:
| Q |
349 |
aggttgaaaaactgaaactggaaaatgcaacactatataaacagtttacggataccagtcaacaatttcatgaggctgatacaaataaccgagtgctaaa |
448 |
Q |
| |
|
|||||||| || ||| ||||||||||||| |||| ||| ||| |||| ||| |||| |||||||||| || ||| | || || |||||||| ||||| |
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|
| T |
1130656 |
aggttgaacaattgaggctggaaaatgcaagcctatttaagcagcttacagatgccagccaacaatttcgcgatgctaacactaacaaccgagtactaaa |
1130557 |
T |
|
| Q |
449 |
atcagatgtagaagctttgagagctaaggtatat |
482 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||| |
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|
| T |
1130556 |
atccgatgttgaagctttgagagctaaggtatat |
1130523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 1131584 - 1131520
Alignment:
| Q |
40 |
gatccatccgatgaagataatgaatcaggtccttgtgaacaaattacaaatccagttgatatgaa |
104 |
Q |
| |
|
|||||||| ||||||||| ||||| |||||||||||||||||| |||||| || ||||||||||| |
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|
| T |
1131584 |
gatccatctgatgaagatgatgaagcaggtccttgtgaacaaagtacaaaccctgttgatatgaa |
1131520 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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