View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_low_109 (Length: 238)
Name: NF2014_low_109
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_low_109 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 30636775 - 30636995
Alignment:
| Q |
18 |
tcaatgtcatctcttatgtctataaagttgaacttcattcacacactgatgtatacacttttgtctcttcttttgacccttactgtcccattcacattct |
117 |
Q |
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| T |
30636775 |
tcaatgtcatctcttatgtctataaagttgaacttcattcacacactgatgtatacacttttgtctcttcttttgacccttactgtcccattcacattct |
30636874 |
T |
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| Q |
118 |
ccactttttatactatcattttctttgtatatatatgtgcatatagtttgtttcattcatcataaaaaatgacaaacacagatgaaaacaaagagcttat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30636875 |
ccactttttatactatcattttctttgtatatatatgtgcatatagtttgtttcattcatcataaaaaatgacaaacacagatgaaaacaaagagcttat |
30636974 |
T |
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| Q |
218 |
taatcagccgttgtcgattct |
238 |
Q |
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||||||||| ||||||||||| |
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| T |
30636975 |
taatcagcccttgtcgattct |
30636995 |
T |
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