View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_low_110 (Length: 238)
Name: NF2014_low_110
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_low_110 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 41729596 - 41729812
Alignment:
| Q |
1 |
acaaagctccaaatttcaatcctaaaaggtttgtgttttcctttgatgtttgttccaaccgaaccnnnnnnncctcgacaacaacatagacgaaaacaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
41729596 |
acaaagctccaaatttcaatcctaaaaggtttgtgttttcctttgatgtttgttccaaccgaaccaaaaaaacctcgacaacaacatagacgaaaacaat |
41729695 |
T |
|
| Q |
101 |
aagagatgatacaagaaacaaagatttgttaattaacatgcatggattaactatgttcctttctctttcttccactcttcaatttcttcaaccatcttca |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41729696 |
aagagatgatacaagaaacaaagatttgttaattaacatgcatggattaactatgttcctttctctttcttccactcttcaatttcttcaaccatcttca |
41729795 |
T |
|
| Q |
201 |
tgcttccaaaaccaaac |
217 |
Q |
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||||||||||||||||| |
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| T |
41729796 |
tgcttccaaaaccaaac |
41729812 |
T |
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