View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_low_112 (Length: 237)
Name: NF2014_low_112
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_low_112 |
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Alignment Details
Target: chr6 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 31 - 212
Target Start/End: Original strand, 12778987 - 12779168
Alignment:
| Q |
31 |
tagctatgtgaaacttgataccaagactttaaattgtactagtgaaagtattatctgcattgctcactgaagaacttacatatttgcagtatctagttgt |
130 |
Q |
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| T |
12778987 |
tagctatgcgaaacttgataccaagactttaaattgtactagtgaaagtattatctgcattgctcactgaagaacttacatatttgcagtatctagttgt |
12779086 |
T |
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| Q |
131 |
gatgcatcatgacnnnnnnnnctttgcatattgcttaactgcatcaagggaagagttgagtttacttaagcacgacataaaa |
212 |
Q |
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| T |
12779087 |
gatgcatcatgacttttttttctttgcatattgcttaactgcgtcaagggaagagttgagtttacttaagcaccacataaaa |
12779168 |
T |
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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 131
Target Start/End: Original strand, 37330945 - 37331005
Alignment:
| Q |
71 |
agtgaaagtattatctgcattgctcactgaagaacttacatatttgcagtatctagttgtg |
131 |
Q |
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| T |
37330945 |
agtgaaagtattctctgcattacttactgaagaacttacatatttggtgtatctagctgtg |
37331005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 202
Target Start/End: Original strand, 19908367 - 19908418
Alignment:
| Q |
152 |
ctttgcatatt-gcttaactgcatcaagggaagagttgagtttacttaagca |
202 |
Q |
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| T |
19908367 |
ctttgcatatttgcttaactccattaagggcagagttgagtttacttaagca |
19908418 |
T |
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