View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_low_115 (Length: 237)
Name: NF2014_low_115
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_low_115 |
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Alignment Details
Target: chr6 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 10 - 172
Target Start/End: Complemental strand, 14503411 - 14503245
Alignment:
| Q |
10 |
ttgtgtctcattgatattgagtcaagatccgctcctggccaccactag----ggctaataacaagcgaaaatatcatcaaaaaaggaatactacaccata |
105 |
Q |
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| T |
14503411 |
ttgtgtctcatcgatattgaatcaagatccgcccctggccaccactagctagggctaataacaagcgaaaacatcatcaaagaagggttactacaccata |
14503312 |
T |
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| Q |
106 |
aacaaaaccaacataaactgtcaataaactttcaaatttggagaccaaaataggaagttacaagggc |
172 |
Q |
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| T |
14503311 |
aacaaaaccaacgtaaactgtcaataaactttcaaatttggagaccaaaataggaagttacaagggc |
14503245 |
T |
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Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 48 - 171
Target Start/End: Complemental strand, 33812058 - 33811935
Alignment:
| Q |
48 |
ccaccactagggctaataacaagcgaaaatatcatcaaaaaaggaatactacaccataaacaaaaccaacataaactgtcaataaactttcaaatttgga |
147 |
Q |
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| T |
33812058 |
ccaccactaggactaagaagaaacgaaaatctcaccaaaggagggacactggaccataaacaaaaccatcacaaattgtcaataaactctcaaatttaga |
33811959 |
T |
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| Q |
148 |
gaccaaaataggaagttacaaggg |
171 |
Q |
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| T |
33811958 |
gaccgaaacaggaagttacaaggg |
33811935 |
T |
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