View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_low_116 (Length: 236)
Name: NF2014_low_116
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_low_116 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 56231111 - 56230891
Alignment:
| Q |
16 |
atatcagcatcaaaacatccgttgtgatcaattgctggccaacagactttgtaagcagcaactcttgctttgggagaaccacctttcgcagttccatttc |
115 |
Q |
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| T |
56231111 |
atatcagcatcaaaacatccgttgtgatcaattgctggccaacagactttgtaagcagcaactcttgctttgggagaaccacctttcgcagttccatttc |
56231012 |
T |
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| Q |
116 |
ctaagccaaaaacattaactccagaaacaaagtttcctcctattgttgatagtgtgtgagatccatgaccttcattgtctcgtgcagtatcaagtgtgcc |
215 |
Q |
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| T |
56231011 |
ctaagccaaaaacattaactccagaaacaaagtttcctcctattgttgatagtgtgtgagatccatgaccttcattgtctcgtgcagtatcaagtgtgcc |
56230912 |
T |
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| Q |
216 |
gttctgtagtaccattgaccc |
236 |
Q |
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| T |
56230911 |
gttctgtagtaccattgaccc |
56230891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 16 - 223
Target Start/End: Complemental strand, 39188837 - 39188630
Alignment:
| Q |
16 |
atatcagcatcaaaacatccgttgtgatcaattgctggccaacagactttgtaagcagcaactcttgctttgggagaaccacctttcgcagttccatttc |
115 |
Q |
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|||||||||||||| ||| || || |||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| || | |
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| T |
39188837 |
atatcagcatcaaagcattcgctgccatcaattggtggccagcagactttgtaagcagcaactcttgctttgggagagccacctttagcagttccgttgc |
39188738 |
T |
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| Q |
116 |
ctaagccaaaaacattaactccagaaacaaagtttcctcctattgttgatagtgtgtgagatccatgaccttcattgtctcgtgcagtatcaagtgtgcc |
215 |
Q |
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| T |
39188737 |
ctaagccaacaaaattagctccggaaacaaagttccctcctaatgttgatagtgtgtgagatccatgacctttattatctcgtggagtatcaagtgtgcc |
39188638 |
T |
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| Q |
216 |
gttctgta |
223 |
Q |
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||| |||| |
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| T |
39188637 |
gttttgta |
39188630 |
T |
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