View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2014_low_118 (Length: 236)

Name: NF2014_low_118
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2014_low_118
NF2014_low_118
[»] chr7 (1 HSPs)
chr7 (1-222)||(1353813-1354033)
[»] chr2 (2 HSPs)
chr2 (14-222)||(35062978-35063186)
chr2 (4-36)||(177410-177442)
[»] chr5 (1 HSPs)
chr5 (107-205)||(5864791-5864888)
[»] chr3 (2 HSPs)
chr3 (107-220)||(17718379-17718491)
chr3 (107-220)||(19019608-19019720)
[»] chr1 (2 HSPs)
chr1 (104-205)||(50451909-50452009)
chr1 (92-205)||(50236601-50236713)
[»] chr4 (4 HSPs)
chr4 (104-205)||(3881729-3881829)
chr4 (104-205)||(14291745-14291845)
chr4 (104-205)||(14307794-14307894)
chr4 (94-211)||(48848175-48848291)


Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 1354033 - 1353813
Alignment:
Q  1 tgctgctttcaaacttgatcttgagaaatcttttgatattttcaactgggacttcctcaagagtactcttcaagatttcagtttctctactatcacaacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1354033 tgctgctttcaaacttgatcttgagaaatcttttgatattttcaactgggacttcctcaagagtactcttcaagatttcagtttctctactatcacaacc 1353934  T
Q  101 aatcttatcatgcattgcgttgcctcctccactttctctatcctctggaatgggaaaaaagatgtctcccttcaagcctactcatggcctcatacaaggt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1353933 aatcttatcatgcattgcgttgcctcctccactttctctatcctctcgaatggga-aaaagatgtctcccttcaagcctactcatggcctcatacaaggt 1353835  T
Q  201 gatccactctcaccatatcttt 222  Q
    ||||||||||||||||||||||    
T  1353834 gatccactctcaccatatcttt 1353813  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 222
Target Start/End: Complemental strand, 35063186 - 35062978
Alignment:
Q  14 cttgatcttgagaaatcttttgatattttcaactgggacttcctcaagagtactcttcaagatttcagtttctc-tactatcacaaccaatcttatcatg 112  Q
    |||||||| |||||| ||||||||| | |||||||||| ||||||| |  |||  ||||||||||  ||||| | |  |||||  |  || |||||||||    
T  35063186 cttgatctggagaaagcttttgataatgtcaactgggatttcctcaggtctaccgttcaagattttggtttcccctgatatcatcattaaacttatcatg 35063087  T
Q  113 cattgcgttgcctcctccactttctctatcctctggaatgggaaaaaagatgtctcccttcaagcctactcatggcctcatacaaggtgatccactctca 212  Q
    ||||| |||||||| ||||||||||  ||||||| |||| || || |||||| ||||  | |||||||| | ||| || | ||||||||||||||| ||     
T  35063086 cattgtgttgcctcatccactttcttgatcctctagaat-ggcaacaagatgcctccacttaagcctacacgtggtcttagacaaggtgatccactatcc 35062988  T
Q  213 ccatatcttt 222  Q
    || |||||||    
T  35062987 ccctatcttt 35062978  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 177410 - 177442
Alignment:
Q  4 tgctttcaaacttgatcttgagaaatcttttga 36  Q
    ||||||||||||||||||||||||| |||||||    
T  177410 tgctttcaaacttgatcttgagaaagcttttga 177442  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 107 - 205
Target Start/End: Complemental strand, 5864888 - 5864791
Alignment:
Q  107 atcatgcattgcgttgcctcctccactttctctatcctctggaatgggaaaaaagatgtctcccttcaagcctactcatggcctcatacaaggtgatcc 205  Q
    ||||||||||| ||| ||| ||||||||||||||||||||  |||||| ||  |||||  ||  ||||||||||||||||| || | ||||||||||||    
T  5864888 atcatgcattgtgttaccttctccactttctctatcctctacaatggg-aacgagatgcttcagttcaagcctactcatggtctgagacaaggtgatcc 5864791  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 220
Target Start/End: Complemental strand, 17718491 - 17718379
Alignment:
Q  107 atcatgcattgcgttgcctcctccactttctctatcctctggaatgggaaaaaagatgtctcccttcaagcctactcatggcctcatacaaggtgatcca 206  Q
    ||||||||||| ||| |||| ||||| ||||||||  | |||||||| || ||| ||| |||||||||||||| ||||||| |||  ||| ||||||||     
T  17718491 atcatgcattgtgtttcctcatccaccttctctattttgtggaatggaaacaaa-atgcctcccttcaagccttctcatggtctctgacagggtgatcct 17718393  T
Q  207 ctctcaccatatct 220  Q
    || || ||||||||    
T  17718392 ctttcgccatatct 17718379  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 220
Target Start/End: Complemental strand, 19019720 - 19019608
Alignment:
Q  107 atcatgcattgcgttgcctcctccactttctctatcctctggaatgggaaaaaagatgtctcccttcaagcctactcatggcctcatacaaggtgatcca 206  Q
    ||||||||||| ||| |||| ||||| ||||||||  | |||||||| || ||| ||| |||||||||||||| ||||||| |||  ||| ||||||||     
T  19019720 atcatgcattgtgtttcctcatccaccttctctattttgtggaatggaaacaaa-atgcctcccttcaagccttctcatggtctctgacagggtgatcct 19019622  T
Q  207 ctctcaccatatct 220  Q
    || || ||||||||    
T  19019621 ctttcgccatatct 19019608  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 205
Target Start/End: Original strand, 50451909 - 50452009
Alignment:
Q  104 cttatcatgcattgcgttgcctcctccactttctctatcctctggaatgggaaaaaagatgtctcccttcaagcctactcatggcctcatacaaggtgat 203  Q
    |||||||||||||| ||  |||||||||||||||||||| | |||||||| || ||| ||| | |  ||||| ||||| |||||||||  ||||||||||    
T  50451909 cttatcatgcattgtgtcacctcctccactttctctatcttatggaatggtaacaaa-atgccgcatttcaaacctacacatggcctccgacaaggtgat 50452007  T
Q  204 cc 205  Q
    ||    
T  50452008 cc 50452009  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 205
Target Start/End: Complemental strand, 50236713 - 50236601
Alignment:
Q  92 atcacaaccaatcttatcatgcattgcgttgcctcctccactttctctatcctctggaatgggaaaaaagatgtctcccttcaagcctactcatggcctc 191  Q
    ||||| ||||| || ||||||||||| ||  ||||  |||| | ||||||| | ||||| ||||| || |||| | || |||||||||||||||||||||    
T  50236713 atcaccaccaaactcatcatgcattgtgtctcctcacccacctactctatcttatggaacgggaacaa-gatgccccctttcaagcctactcatggcctc 50236615  T
Q  192 atacaaggtgatcc 205  Q
    | | ||||||||||    
T  50236614 agataaggtgatcc 50236601  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 205
Target Start/End: Original strand, 3881729 - 3881829
Alignment:
Q  104 cttatcatgcattgcgttgcctcctccactttctctatcctctggaatgggaaaaaagatgtctcccttcaagcctactcatggcctcatacaaggtgat 203  Q
    |||||||||||||| ||  |||||||||| ||||||||| | |||||||| || ||| ||| | |  ||||| ||||| |||||||||  ||||||||||    
T  3881729 cttatcatgcattgtgtcacctcctccaccttctctatcttatggaatggtaacaaa-atgccgcatttcaaacctacacatggcctccgacaaggtgat 3881827  T
Q  204 cc 205  Q
    ||    
T  3881828 cc 3881829  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 205
Target Start/End: Original strand, 14291745 - 14291845
Alignment:
Q  104 cttatcatgcattgcgttgcctcctccactttctctatcctctggaatgggaaaaaagatgtctcccttcaagcctactcatggcctcatacaaggtgat 203  Q
    |||||||||||||| ||  |||| |||||| ||||||| || ||||||||| || ||||||  ||| || |||||| | |||||||||| |||||| |||    
T  14291745 cttatcatgcattgtgtcacctcttccactctctctattctttggaatggg-aacaagatgcatccttttaagccttcccatggcctcagacaaggagat 14291843  T
Q  204 cc 205  Q
    ||    
T  14291844 cc 14291845  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 205
Target Start/End: Original strand, 14307794 - 14307894
Alignment:
Q  104 cttatcatgcattgcgttgcctcctccactttctctatcctctggaatgggaaaaaagatgtctcccttcaagcctactcatggcctcatacaaggtgat 203  Q
    |||||||||||||| ||  |||| |||||| ||||||| || ||||||||| || ||||||  ||| || |||||| | |||||||||| |||||| |||    
T  14307794 cttatcatgcattgtgtcacctcttccactctctctattctttggaatggg-aacaagatgcatccttttaagccttcccatggcctcagacaaggagat 14307892  T
Q  204 cc 205  Q
    ||    
T  14307893 cc 14307894  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 211
Target Start/End: Original strand, 48848175 - 48848291
Alignment:
Q  94 cacaaccaatcttatcatgcattgcgttgcctcctccactttctctatcctctggaatgggaaaaaagatgtctcccttcaagcctactcatggcctcat 193  Q
    ||||| |||||| ||||||||||| |||   || || |||||||| ||||||| |||| ||||| ||| || |||||||  | ||||||||||| ||||     
T  48848175 cacaatcaatctcatcatgcattgtgtttgttcttcaactttctccatcctctagaat-ggaaacaagttgcctccctttcatcctactcatgggctcag 48848273  T
Q  194 acaaggtgatccactctc 211  Q
    ||| |||||||| |||||    
T  48848274 acagggtgatccgctctc 48848291  T

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