View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_low_119 (Length: 236)
Name: NF2014_low_119
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_low_119 |
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| [»] chr8 (1 HSPs) |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 2440400 - 2440180
Alignment:
| Q |
16 |
ccatcttctttagcaggaccaatatatgcatttgcaaagaactctttagctaatgtcgtactagcctcttttgcaaatgatgtcaattctccccaccctc |
115 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2440400 |
ccatcttctttagcaagaccaatatatgcatttgcaaagaactctttagctaatgtcgtactagcctcttttgcaaatgatgtcaattctccccaccctc |
2440301 |
T |
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| Q |
116 |
tggtcgttatcactgcttgaatatctgataatttgtccccttccaaccggaaatttttctctaactcaaattttttgtaggccagaaacttcgaatagcg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2440300 |
tggtcgttatcactgcttgaatatctgataatttgtccccttccaaccggaaatttttctctaactcaaattttttgtaggccagaaacttcgaatagcg |
2440201 |
T |
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| Q |
216 |
ctcttgatggaccaatgatat |
236 |
Q |
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||||||||||||||||||||| |
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| T |
2440200 |
ctcttgatggaccaatgatat |
2440180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 41665467 - 41665687
Alignment:
| Q |
16 |
ccatcttctttagcaggaccaatatatgcatttgcaaagaactctttagctaatgtcgtactagcctcttttgcaaatgatgtcaattctccccaccctc |
115 |
Q |
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||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||| |
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| T |
41665467 |
ccatcttctttggcagtacccatatatgcatttgcaaagaactctttagctaatgtcgcactagcctcttttgcaaatgatgtcaatttgccccatcctc |
41665566 |
T |
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| Q |
116 |
tggtcgttatcactgcttgaatatctgataatttgtccccttccaaccggaaatttttctctaactcaaattttttgtaggccagaaacttcgaatagcg |
215 |
Q |
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| T |
41665567 |
tggccactatcattgcctgaatatctgagaatttgtccccttccaaccagaaatttttttctaacacaaactttttgttggttagaaacttcgaatagcg |
41665666 |
T |
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| Q |
216 |
ctcttgatggaccaatgatat |
236 |
Q |
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| T |
41665667 |
ctcttgatggaccattgatat |
41665687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 41656706 - 41656925
Alignment:
| Q |
16 |
ccatcttctttagcaggaccaatatatgcatttgcaaagaactctttagctaatgtcgtactagcctcttttgcaaatgatgtcaattctccccaccctc |
115 |
Q |
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|||||||||||||||||||| | |||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||| || ||||| |||| |
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| T |
41656706 |
ccatcttctttagcaggacccagatatgcatttgcaaagaactctttagctaatgg-gcactagcctcttttgcaaatgttgtcagatccccccatcctc |
41656804 |
T |
|
| Q |
116 |
tggtcgttatcactgcttgaatatctgataatttgtccccttccaaccggaaatttttctctaactcaaattttttgtaggccagaaacttcgaatagcg |
215 |
Q |
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||||| ||||| | | ||||||||||| ||||||| |||||||||| |||| ||||| ||||| |||| ||||||| ||||||||||||||||||| | |
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| T |
41656805 |
tggtcactatcatttcctgaatatctgagaatttgtacccttccaactggaattttttttctaatacaaactttttgttggccagaaacttcgaatagtg |
41656904 |
T |
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| Q |
216 |
ctcttgatggaccaatgatat |
236 |
Q |
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| T |
41656905 |
ctcttgatggaccaatgatat |
41656925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 39 - 234
Target Start/End: Original strand, 41706703 - 41706898
Alignment:
| Q |
39 |
atatgcatttgcaaagaactctttagctaatgtcgtactagcctcttttgcaaatgatgtcaattctccccaccctctggtcgttatcactgcttgaata |
138 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| ||||||| | ||||| | |||| ||| |
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| T |
41706703 |
atatgcatttgcaaagaactctttagctaatgtcgtactagcatcttttgcaaacgatgtcaattccacccatcctctggacactatcattacttggata |
41706802 |
T |
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| Q |
139 |
tctgataatttgtccccttccaaccggaaatttttctctaactcaaattttttgtaggccagaaacttcgaatagcgctcttgatggaccaatgat |
234 |
Q |
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||| | ||||||| ||||||||||||||||||||| ||| | |||| ||||||| ||||||||||| ||||||||||||||||| ||| ||||| |
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| T |
41706803 |
tctaagaatttgttcccttccaaccggaaatttttttcttccacaaactttttgttggccagaaactcagaatagcgctcttgatgaaccgatgat |
41706898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 234
Target Start/End: Original strand, 41716492 - 41716701
Alignment:
| Q |
25 |
ttagcaggaccaatatatgcatttgcaaagaactctttagctaatgtcgtactagcctcttttgcaaatgatgtcaattctccccaccctctggtcgtta |
124 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||| |||| ||||||| || |
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| T |
41716492 |
ttagcaggaccctgatatgcatttgcaaagaactctttagctattgtcgtactagcatcttttgcaaacgatgtcaattccacccatcctctggattcta |
41716591 |
T |
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| Q |
125 |
tcactgcttgaatatctgataatttgtccccttccaaccggaaatttttctctaactcaaattttttgtaggccagaaacttcgaatagcgctcttgatg |
224 |
Q |
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||| | |||||| || |||||| |||||||||| ||||||| || ||| | |||| ||||||| ||||||||||| ||||| |||| |||||| |
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| T |
41716592 |
tcattttatgaatacacgagaatttgctcccttccaactggaaattgttttctcccacaaactttttgttggccagaaactcagaataacgcttttgatg |
41716691 |
T |
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| Q |
225 |
gaccaatgat |
234 |
Q |
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||||||||| |
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| T |
41716692 |
aaccaatgat |
41716701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 221
Target Start/End: Original strand, 41648615 - 41648817
Alignment:
| Q |
16 |
ccatcttctttagcaggaccaatatatgcatttgcaaagaactctttagctaatgtcgtactagcctcttttgcaaatgatgtcaattctccccaccctc |
115 |
Q |
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||||||||||||| |||||| ||||||||||||| | || |||||||| ||||| |||| |||||||| ||||| |||||||||| | || |||| |
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| T |
41648615 |
ccatcttctttagtaggaccctgatatgcatttgcagacaattctttagcaaatgttgtacaagcctcttctgcaagctatgtcaattccactcatcctc |
41648714 |
T |
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| Q |
116 |
tggtcgttatcactgcttgaatatctgataatttgtccccttccaaccggaaatttttctctaactcaaattttttgtaggccagaaacttcgaatagcg |
215 |
Q |
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||| | ||| ||||||||||||||| |||| ||||||||||| | ||| ||||| |||| | |||| ||||| ||| |||||||| |||||||| |
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| T |
41648715 |
tggccactat---tgcttgaatatctgagaattcttccccttccaaacagaattttttttctagcacaaactttttactggcaagaaacttagaatagcg |
41648811 |
T |
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| Q |
216 |
ctcttg |
221 |
Q |
| |
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||||| |
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| T |
41648812 |
gtcttg |
41648817 |
T |
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