View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_low_12 (Length: 489)
Name: NF2014_low_12
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 20 - 479
Target Start/End: Original strand, 10976695 - 10977154
Alignment:
| Q |
20 |
tctatttatagtgcatcaatgcttagtaattaagagatgagaaatgagcttttttctccgatccagctttgaaatcgagctaaaactgcgtttttctagc |
119 |
Q |
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| T |
10976695 |
tctatttatagtgcatcaatgcttagtaattaagagatgagaaatgagcttttttctccgatccagctttgaaatcgagctaaaactgtgtttttctagc |
10976794 |
T |
|
| Q |
120 |
aaaaaagcgcaggagcgcatggctggacatgcatgggcacatgaggtagcctttgaagttttctcatgcgcaagggcgcataggcagtaggaggacgcaa |
219 |
Q |
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| T |
10976795 |
aaaaaagcgcaggagcgcatggctggacatgcatgggcacatgaggtagcctttgaagttttctcatgcgcaagggcgcataggcagtaggaggacgcaa |
10976894 |
T |
|
| Q |
220 |
catgccacaagcttggcctcgttttgatagattatccttatgaatcaaataaattccatgatggatctctagaaagcaatgcacattccaataggtcgct |
319 |
Q |
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| T |
10976895 |
catgccacaagcttggcctcgttttgatagattatccttatgaatgaaataaattccatgatggatctctagaaagcaatgcacattccaataggtcgct |
10976994 |
T |
|
| Q |
320 |
tcaatgtgttgcagatgatgcgattgaaggagacaccatggaacaccataaccatatggagagggttgaacttgagcacactgttgcacatgaggctatt |
419 |
Q |
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| T |
10976995 |
tcaatgtgttgcagatgatgcgattgaaggagacaccatggaacaccataaccatatggagagggttgaacttgagcacactgttgcacatgaggctatt |
10977094 |
T |
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| Q |
420 |
cagtttgattttgaggagctcatcttcaaagagcaacaacatgattaatatgctcctttg |
479 |
Q |
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| T |
10977095 |
cagtttgattttgaggagctcatcttcaaagagcaacaacatgattaatatgctcctttg |
10977154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 5636693 - 5636600
Alignment:
| Q |
20 |
tctatttatagtgcatcaatgcttagtaattaagagatgagaaatgagcttttttctccgatccagctttgaaatcgagctaaaactgcgtttt |
113 |
Q |
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|||||||||||||||||| | |||||| |||||||||||| | ||||||||| ||| |||||||||| ||| | | |||||||||| |||| |
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| T |
5636693 |
tctatttatagtgcatcattacttagtgattaagagatgaagaccgagctttttcctctgatccagcttgaaaaacaaactaaaactgcatttt |
5636600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 26419238 - 26419165
Alignment:
| Q |
20 |
tctatttatagtgcatcaatgcttagtaattaagagatgagaaatgagcttttttctccgatccagctttgaaa |
93 |
Q |
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|||||||||||||||||| ||| || | |||||||||||||| || | ||||| |||| ||||||||| |||| |
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| T |
26419238 |
tctatttatagtgcatcattgcgtaatgattaagagatgagatctgtgatttttcctccaatccagcttagaaa |
26419165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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