View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2014_low_122 (Length: 227)

Name: NF2014_low_122
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2014_low_122
NF2014_low_122
[»] chr4 (3 HSPs)
chr4 (5-79)||(6938887-6938961)
chr4 (127-161)||(6939020-6939054)
chr4 (176-220)||(6939053-6939097)
[»] chr3 (1 HSPs)
chr3 (146-219)||(43682014-43682087)
[»] chr7 (1 HSPs)
chr7 (145-219)||(5859107-5859181)


Alignment Details
Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 79
Target Start/End: Original strand, 6938887 - 6938961
Alignment:
Q  5 cacaaccatctttagaataagcgaacttaattcccttgtttttgaatacattgaacttaatgcctcactgcgtat 79  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6938887 cacaaccatctttagaataagcgagcttaattcccttgtttttgaatacattgaacttaatgcctcactgcgtat 6938961  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 161
Target Start/End: Original strand, 6939020 - 6939054
Alignment:
Q  127 tactaaagtatattgtattggaacaagatttggtg 161  Q
    |||||||||||||||||||||||||||||||||||    
T  6939020 tactaaagtatattgtattggaacaagatttggtg 6939054  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 6939053 - 6939097
Alignment:
Q  176 tgctgtaacatatctcagacgtccgatctttaatcggtggctgaa 220  Q
    |||||||||| ||||||| |||||||||||||||||||| |||||    
T  6939053 tgctgtaacacatctcagccgtccgatctttaatcggtgactgaa 6939097  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 146 - 219
Target Start/End: Complemental strand, 43682087 - 43682014
Alignment:
Q  146 ggaacaagatttggtgttctaacagcgtcctgctgtaacatatctcagacgtccgatctttaatcggtggctga 219  Q
    |||||| |||||||||||  ||||| |||||||||||||| ||||||| ||||||||| | |||||||||||||    
T  43682087 ggaacaggatttggtgttgcaacagtgtcctgctgtaacagatctcagccgtccgatcctcaatcggtggctga 43682014  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 5859181 - 5859107
Alignment:
Q  145 tggaacaagatttggtgttctaacagcgtcctgctgtaacatatctcagacgtccgatctttaatcggtggctga 219  Q
    ||||||| ||||||||| |  |||  ||||||| ||||||||||||| | ||||||||||||||||| |||||||    
T  5859181 tggaacatgatttggtgcttaaactacgtcctgatgtaacatatctccgccgtccgatctttaatcgatggctga 5859107  T

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