View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_low_123 (Length: 223)
Name: NF2014_low_123
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_low_123 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 29433007 - 29433213
Alignment:
| Q |
1 |
tgttgtttcttgatgaaccaacttgtggcttagatagtgcttctgcattttttgttgttcaaactctcagaaatattgctcatgatggaaggactgttat |
100 |
Q |
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| T |
29433007 |
tgttgtttcttgatgaaccaacttgtggcttagatagtgcttctgcattttttgttgttcaaactctcagaaatattgctcatgatggaaggactgttat |
29433106 |
T |
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| Q |
101 |
ttcttcaattcatcagcccaatagtgaagtatttgcactttttgacgaccttttcttgctcgctcgtggcgaaactgtttattttggtgaagccaaaatg |
200 |
Q |
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| T |
29433107 |
ttcttcaattcatcagcccaatagtgaagtatttgcactttttgacgaccttttcttgctcgctcgtggcgaaactgtttattttggtgaagccaaaatg |
29433206 |
T |
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| Q |
201 |
gcaattg |
207 |
Q |
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||||||| |
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| T |
29433207 |
gcaattg |
29433213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 4 - 205
Target Start/End: Original strand, 29465841 - 29466042
Alignment:
| Q |
4 |
tgtttcttgatgaaccaacttgtggcttagatagtgcttctgcattttttgttgttcaaactctcagaaatattgctcatgatggaaggactgttatttc |
103 |
Q |
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| T |
29465841 |
tgtttcttgatgaaccgactagtggtttggacagtgcttctgcattttttgttgtccaaactcttagaaatgttgctcgtgatggaaggactgttatttc |
29465940 |
T |
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| Q |
104 |
ttcaattcatcagcccaatagtgaagtatttgcactttttgacgaccttttcttgctcgctcgtggcgaaactgtttattttggtgaagccaaaatggca |
203 |
Q |
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| T |
29465941 |
ttctattcatcagcctagcagtgaagtctttgcactttttgatgatcttttcttgctctctggtggtgaaactgtttattttggtgaagctaaaatggca |
29466040 |
T |
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| Q |
204 |
at |
205 |
Q |
| |
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|| |
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| T |
29466041 |
at |
29466042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 3 - 137
Target Start/End: Original strand, 29480060 - 29480194
Alignment:
| Q |
3 |
ttgtttcttgatgaaccaacttgtggcttagatagtgcttctgcattttttgttgttcaaactctcagaaatattgctcatgatggaaggactgttattt |
102 |
Q |
| |
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||||| |||||||| ||||| |||| || || ||||| || |||| |||||||| ||||||| | ||||| |||||||||||||| | |||||||||| |
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| T |
29480060 |
ttgttccttgatgagccaacaagtggtttggacagtgcctcagcatattttgttgctcaaactttgagaaacattgctcatgatgggaaaactgttattt |
29480159 |
T |
|
| Q |
103 |
cttcaattcatcagcccaatagtgaagtatttgca |
137 |
Q |
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||||||||||||| || | |||||| || |||||| |
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| T |
29480160 |
cttcaattcatcaaccaagtagtgaggtttttgca |
29480194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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