View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_low_16 (Length: 473)
Name: NF2014_low_16
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_low_16 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 19 - 473
Target Start/End: Complemental strand, 33587503 - 33587050
Alignment:
| Q |
19 |
acttcagtaccagctgcccttcttagaatatctgggaagaatttattgagaaacggcaccattgttgtaacacctcctgaatttgataacatttttcatt |
118 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33587503 |
acttcagtaccagctgcctttcttagaatatctgggaagaatttattgagaaatggcaccattgttgtaacacctcctgaatttgataacatttttcatt |
33587404 |
T |
|
| Q |
119 |
agtaaaaagggtgagctttatgactttggttcttctccaagtacattttgaagataaaatgtaaaactaatgtatagcatcatgattaaaatgcaattag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33587403 |
agtaaaaagggtgagctttatgactttggttcttctccaagtacattttgaagataaaatgtaaaattaatgtatagcatcatgattaaaatgcaattag |
33587304 |
T |
|
| Q |
219 |
actttgtccaaaacctatttagatttgtactactataatagttttaaatttgatgattaagcttgtgcaattatgttaatttctttaatgattttgacat |
318 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33587303 |
actttgtccaaaacctatttagatttgttctactataatagttttaaattggatgattaagcttgtgcaattatgttaatttctttaatgattttgacat |
33587204 |
T |
|
| Q |
319 |
tttataggtacaannnnnnnagaattttctacagaaacaaaccctttgctgagtctgagttcaattcgcgagttataggagcaaatcattcaatttttga |
418 |
Q |
| |
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||||||||||||| |||||||||||||||||||||| | |||||||||| ||||| ||||| ||||||||| || ||||||||||||||||||| |
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| T |
33587203 |
tttataggtacaatttttttagaattttctacagaaacaaacaccttgctgagtc-gagtttaattctcgagttatatgatcaaatcattcaatttttga |
33587105 |
T |
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| Q |
419 |
gcaaatcttgatgtagcgtaagacaagattcttttgaaagcaaaaaacatggtct |
473 |
Q |
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|||| |||||||||| || ||||||| |||| |||||||||||||||||||| |
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| T |
33587104 |
gcaatgattgatgtagcagaatacaagatactttagaaagcaaaaaacatggtct |
33587050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 19 - 473
Target Start/End: Complemental strand, 33594675 - 33594222
Alignment:
| Q |
19 |
acttcagtaccagctgcccttcttagaatatctgggaagaatttattgagaaacggcaccattgttgtaacacctcctgaatttgataacatttttcatt |
118 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33594675 |
acttcagtaccagctgcctttcttagaatatctgggaagaatttattgagaaatggcaccattgttgtaacacctcctgaatttgataacatttttcatt |
33594576 |
T |
|
| Q |
119 |
agtaaaaagggtgagctttatgactttggttcttctccaagtacattttgaagataaaatgtaaaactaatgtatagcatcatgattaaaatgcaattag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33594575 |
agtaaaaagggtgagctttatgactttggttcttctccaagtacattttgaagataaaatgtaaaaataatgtatagcatcatgattaaaatgcaattag |
33594476 |
T |
|
| Q |
219 |
actttgtccaaaacctatttagatttgtactactataatagttttaaatttgatgattaagcttgtgcaattatgttaatttctttaatgattttgacat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33594475 |
actttgtccaaaacctatttagatttgttctactataatagttttaaattggatgattaagcttgtgcaattatgttaatttctttaatgattttgacat |
33594376 |
T |
|
| Q |
319 |
tttataggtacaannnnnnnagaattttctacagaaacaaaccctttgctgagtctgagttcaattcgcgagttataggagcaaatcattcaatttttga |
418 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| | |||||||||| ||||| ||||| ||||||||| || ||||||||||||||||||| |
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| T |
33594375 |
tttataggtacaatttttttagaattttctacagaaacaaacaccttgctgagtc-gagtttaattctcgagttatatgatcaaatcattcaatttttga |
33594277 |
T |
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| Q |
419 |
gcaaatcttgatgtagcgtaagacaagattcttttgaaagcaaaaaacatggtct |
473 |
Q |
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|||| |||||||||| || ||||||| |||| |||||||||||||||||||| |
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| T |
33594276 |
gcaatgattgatgtagcagaatacaagatactttagaaagcaaaaaacatggtct |
33594222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 19 - 473
Target Start/End: Complemental strand, 33601806 - 33601353
Alignment:
| Q |
19 |
acttcagtaccagctgcccttcttagaatatctgggaagaatttattgagaaacggcaccattgttgtaacacctcctgaatttgataacatttttcatt |
118 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33601806 |
acttcagtaccagctgcctttcttagaatatctgggaagaatttattgagaaatggcaccattgttgtaacacctcctgaatttgataacatttttcatt |
33601707 |
T |
|
| Q |
119 |
agtaaaaagggtgagctttatgactttggttcttctccaagtacattttgaagataaaatgtaaaactaatgtatagcatcatgattaaaatgcaattag |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33601706 |
agtaaaaagggtgagctttatgactttggttcttctccaagtacattttgaagataaaatgtaaaaataatgtatagcatcatgattaaaatgcaattag |
33601607 |
T |
|
| Q |
219 |
actttgtccaaaacctatttagatttgtactactataatagttttaaatttgatgattaagcttgtgcaattatgttaatttctttaatgattttgacat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33601606 |
actttgtccaaaacctatttagatttgttctactataatagttttaaattggatgattaagcttgtgcaattatgttaatttctttaatgattttgacat |
33601507 |
T |
|
| Q |
319 |
tttataggtacaannnnnnnagaattttctacagaaacaaaccctttgctgagtctgagttcaattcgcgagttataggagcaaatcattcaatttttga |
418 |
Q |
| |
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||||||||||||| |||||||||||||||||||||| | |||||||||| ||||| ||||| ||||||||| || ||||||||||||||||||| |
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| T |
33601506 |
tttataggtacaatttttttagaattttctacagaaacaaacaccttgctgagtc-gagtttaattctcgagttatatgatcaaatcattcaatttttga |
33601408 |
T |
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| Q |
419 |
gcaaatcttgatgtagcgtaagacaagattcttttgaaagcaaaaaacatggtct |
473 |
Q |
| |
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|||| |||||||||| || ||||||| |||| |||||||||||||||||||| |
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| T |
33601407 |
gcaatgattgatgtagcagaatacaagatactttagaaagcaaaaaacatggtct |
33601353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 33608280 - 33608200
Alignment:
| Q |
19 |
acttcagtaccagctgcccttcttagaatatctgggaagaatttattgagaaacggcaccattgttgtaacacctcctgaa |
99 |
Q |
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||||||| |||||||||| | |||||||||||||| |||||||| | |||||||||||||| ||||| |||||||||||| |
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| T |
33608280 |
acttcagcaccagctgccttccttagaatatctggaaagaatttttgaagaaacggcaccatcgttgtgacacctcctgaa |
33608200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 33616052 - 33615984
Alignment:
| Q |
31 |
gctgcccttcttagaatatctgggaagaatttattgagaaacggcaccattgttgtaacacctcctgaa |
99 |
Q |
| |
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|||||| |||| ||||| ||||| |||||||| | |||||| |||||||| |||||||||||||||||| |
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| T |
33616052 |
gctgcctttctcagaatgtctggaaagaatttttggagaaatggcaccatcgttgtaacacctcctgaa |
33615984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 99
Target Start/End: Complemental strand, 33626556 - 33626481
Alignment:
| Q |
24 |
agtaccagctgcccttcttagaatatctgggaagaatttattgagaaacggcaccattgttgtaacacctcctgaa |
99 |
Q |
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||||||| ||||| |||||||||| |||||||||||||| || ||||| ||| ||| ||||| |||||||||||| |
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| T |
33626556 |
agtaccaactgcctttcttagaatgtctgggaagaattttttaagaaatggcttcatagttgtgacacctcctgaa |
33626481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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