View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2014_low_17 (Length: 473)

Name: NF2014_low_17
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2014_low_17
NF2014_low_17
[»] chr3 (18 HSPs)
chr3 (15-161)||(8340524-8340670)
chr3 (15-149)||(8350424-8350558)
chr3 (15-148)||(8353531-8353665)
chr3 (367-465)||(8350109-8350207)
chr3 (374-465)||(8252955-8253046)
chr3 (318-470)||(8352848-8353004)
chr3 (377-461)||(8356424-8356508)
chr3 (377-461)||(8360597-8360681)
chr3 (367-461)||(8260699-8260793)
chr3 (379-459)||(8334134-8334214)
chr3 (371-461)||(8258592-8258682)
chr3 (154-210)||(8339984-8340040)
chr3 (247-295)||(8353006-8353054)
chr3 (371-461)||(8265665-8265755)
chr3 (318-355)||(8350237-8350274)
chr3 (145-197)||(8356620-8356672)
chr3 (145-197)||(8360837-8360889)
chr3 (15-65)||(8256216-8256266)


Alignment Details
Target: chr3 (Bit Score: 139; Significance: 1e-72; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 15 - 161
Target Start/End: Complemental strand, 8340670 - 8340524
Alignment:
Q  15 aataagctctgaaaaagacagaagaaataacattgtaatttcgaatgcataattaacaagtgtccaaagcagccacaaaatatatgcatacattgaagaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  8340670 aataagctctgaaaaagacagaagaaataacattgtaatttcgaatgcataatcaacaagtttccaaagcagccacaaaatatatgcatacattgaagaa 8340571  T
Q  115 ttttcaaagttcaatgtggtcccaaaaatgttctccttgctcgctaa 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  8340570 ttttcaaagttcaatgtggtcccaaaaatgttctccttgctcgctaa 8340524  T

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Target: chr3; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 15 - 149
Target Start/End: Complemental strand, 8350558 - 8350424
Alignment:
Q  15 aataagctctgaaaaagacagaagaaataacattgtaatttcgaatgcataattaacaagtgtccaaagcagccacaaaatatatgcatacattgaagaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  8350558 aataagctctgaaaaagacagaagaaataacattgtaatttcgaatgcatattcaacaagtgtccaaagcagccacaaaatatatgcatacattgaagaa 8350459  T
Q  115 ttttcaaagttcaatgtggtcccaaaaatgttctc 149  Q
    |||||||||||| |||||||||||||||| |||||    
T  8350458 ttttcaaagttctatgtggtcccaaaaattttctc 8350424  T

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Target: chr3; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 15 - 148
Target Start/End: Complemental strand, 8353665 - 8353531
Alignment:
Q  15 aataagctctgaaaaagacagaagaaataacattgtaatttcgaatgcataattaacaagtgtccaaagcagccac-aaaatatatgcatacattgaaga 113  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| | |||| | |||||||||||||||||||| ||||||||||||||| | |||||    
T  8353665 aataagctctgaaaaagacagaagaaataacgttgtaatttcgaatacttaatcagcaagtgtccaaagcagccacaaaaatatatgcatacgtagaaga 8353566  T
Q  114 attttcaaagttcaatgtggtcccaaaaatgttct 148  Q
    ||||||||||||| |||||||||||||||||||||    
T  8353565 attttcaaagttctatgtggtcccaaaaatgttct 8353531  T

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Target: chr3; HSP #4
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 367 - 465
Target Start/End: Complemental strand, 8350207 - 8350109
Alignment:
Q  367 tcactttttgatggctttgatttcatctttcttcaattgttttggtccttcttcaaactcatcatctcaagtttctgataatgctgaaaattcatgtca 465  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  8350207 tcactttttgatggctttgatttcatcattcttcaattgttttggtccttcttcaaactcatcttctcaagtttctgataatgctgaaaattcatgtca 8350109  T

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Target: chr3; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 374 - 465
Target Start/End: Complemental strand, 8253046 - 8252955
Alignment:
Q  374 ttgatggctttgatttcatctttcttcaattgttttggtccttcttcaaactcatcatctcaagtttctgataatgctgaaaattcatgtca 465  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  8253046 ttgatggctttgatttcatcattcttcaattgttttggtccttcttcaaactcatcttctcaagtttctgataatgctgaaaattcatgtca 8252955  T

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Target: chr3; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 318 - 470
Target Start/End: Complemental strand, 8353004 - 8352848
Alignment:
Q  318 actgcaatttcaagtcacacctaaatcttcatttcatt----tgtaaaccaagtcactttttgatggctttgatttcatctttcttcaattgttttggtc 413  Q
    ||||| ||||||||||||||||||||| ||||||||||    || ||||||| ||||||||||||||||||||||||||| || |||||||| |||||||    
T  8353004 actgcgatttcaagtcacacctaaatcctcatttcattgcagtgcaaaccaaatcactttttgatggctttgatttcatcatttttcaattgctttggtc 8352905  T
Q  414 cttcttcaaactcatcatctcaagtttctgataatgctgaaaattcatgtcactcga 470  Q
    ||||||| |||||||| |||||||||| |||| ||| |||||| |||| ||| ||||    
T  8352904 cttcttcgaactcatcttctcaagtttatgattatgatgaaaaatcatctcaatcga 8352848  T

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Target: chr3; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 377 - 461
Target Start/End: Complemental strand, 8356508 - 8356424
Alignment:
Q  377 atggctttgatttcatctttcttcaattgttttggtccttcttcaaactcatcatctcaagtttctgataatgctgaaaattcat 461  Q
    ||||||||||||| | | ||||||||||| |||||||  |||||||||||||||||||||||||||||| ||||| |||||||||    
T  8356508 atggctttgattttaccgttcttcaattgctttggtctctcttcaaactcatcatctcaagtttctgattatgctcaaaattcat 8356424  T

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Target: chr3; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 377 - 461
Target Start/End: Complemental strand, 8360681 - 8360597
Alignment:
Q  377 atggctttgatttcatctttcttcaattgttttggtccttcttcaaactcatcatctcaagtttctgataatgctgaaaattcat 461  Q
    ||||||||||||||| ||||||||||||| || ||||  |||||||||| ||||||||||||||||||| ||| |||||||||||    
T  8360681 atggctttgatttcagctttcttcaattgcttcggtctctcttcaaacttatcatctcaagtttctgattatgttgaaaattcat 8360597  T

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Target: chr3; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 367 - 461
Target Start/End: Complemental strand, 8260793 - 8260699
Alignment:
Q  367 tcactttttgatggctttgatttcatctttcttcaattgttttggtccttcttcaaactcatcatctcaagtttctgataatgctgaaaattcat 461  Q
    ||||||||||||||||||||||||||| ||||| | ||| ||||| | ||||| | ||||||||||||||||||||||| ||| |||||| ||||    
T  8260793 tcactttttgatggctttgatttcatccttcttaagttgctttggccattctttagactcatcatctcaagtttctgattatgatgaaaaatcat 8260699  T

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Target: chr3; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 379 - 459
Target Start/End: Complemental strand, 8334214 - 8334134
Alignment:
Q  379 ggctttgatttcatctttcttcaattgttttggtccttcttcaaactcatcatctcaagtttctgataatgctgaaaattc 459  Q
    ||||||||| ||| | | ||||||||||||||||||||||||||||||||| || ||||||| ||| ||||||||||||||    
T  8334214 ggctttgatatcaccatacttcaattgttttggtccttcttcaaactcatcttcacaagtttatgagaatgctgaaaattc 8334134  T

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Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 371 - 461
Target Start/End: Complemental strand, 8258682 - 8258592
Alignment:
Q  371 tttttgatggctttgatttcatctttcttcaattgttttggtccttcttcaaactcatcatctcaagtttctgataatgctgaaaattcat 461  Q
    ||||| |||||||||||||||||  | || | ||| ||||| | ||||||||||||||||||||||||||||||| ||| |||||| ||||    
T  8258682 ttttttatggctttgatttcatccattttaagttgctttggccattcttcaaactcatcatctcaagtttctgattatgatgaaaaatcat 8258592  T

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Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 8340040 - 8339984
Alignment:
Q  154 ctcgctaagcaaatggactaacatagtaccttcctaacctttttgtaatcattctat 210  Q
    |||||||||||||||||||||||||||||||||||||  ||||||| || |||||||    
T  8340040 ctcgctaagcaaatggactaacatagtaccttcctaaattttttgttatgattctat 8339984  T

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Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 247 - 295
Target Start/End: Complemental strand, 8353054 - 8353006
Alignment:
Q  247 ataaccagaatttaaaccaatattacaactaaatcatttaagctttgca 295  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  8353054 ataacctgaattcaaaccaatattacaactaaatcatttaagctttgca 8353006  T

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Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 371 - 461
Target Start/End: Complemental strand, 8265755 - 8265665
Alignment:
Q  371 tttttgatggctttgatttcatctttcttcaattgttttggtccttcttcaaactcatcatctcaagtttctgataatgctgaaaattcat 461  Q
    ||||| ||||||||||||||||| ||||| | ||| ||||| | ||||| | ||||||| ||||||||||||||| ||| |||||| ||||    
T  8265755 ttttttatggctttgatttcatccttcttaagttgctttggccattctttagactcatcgtctcaagtttctgattatgatgaaaaatcat 8265665  T

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Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 318 - 355
Target Start/End: Complemental strand, 8350274 - 8350237
Alignment:
Q  318 actgcaatttcaagtcacacctaaatcttcatttcatt 355  Q
    |||||||||| |||||||||||||||||||||||||||    
T  8350274 actgcaattttaagtcacacctaaatcttcatttcatt 8350237  T

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Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 8356672 - 8356620
Alignment:
Q  145 ttctccttgctcgctaagcaaatggactaacatagtaccttcctaaccttttt 197  Q
    ||||||||||| ||||||||||||| | ||| ||| |||||||||||||||||    
T  8356672 ttctccttgcttgctaagcaaatggtccaacgtagaaccttcctaaccttttt 8356620  T

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Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 8360889 - 8360837
Alignment:
Q  145 ttctccttgctcgctaagcaaatggactaacatagtaccttcctaaccttttt 197  Q
    ||||| ||||| |||||||||||||| |||| ||| |||||||||||||||||    
T  8360889 ttctctttgcttgctaagcaaatggagtaacgtagaaccttcctaaccttttt 8360837  T

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Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 8256266 - 8256216
Alignment:
Q  15 aataagctctgaaaaagacagaagaaataacattgtaatttcgaatgcata 65  Q
    |||||||||||||||||||| | |||| ||||||||||| |||||| ||||    
T  8256266 aataagctctgaaaaagacaaacgaaacaacattgtaatatcgaatacata 8256216  T

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