View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_low_2 (Length: 807)
Name: NF2014_low_2
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 397; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 170 - 677
Target Start/End: Original strand, 45178074 - 45178596
Alignment:
| Q |
170 |
tcaacacaaacaaagggggaaaaggaaa-tgccgtgactgttcatctttgtttcataataataata---------tcaatgcgtttcggtacgctcaaaa |
259 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
45178074 |
tcaacacaaacaaagggggaaaaggaaaatgccgtgactgttcatccttgtttcataataataataataataatatcaatgcgtttcggtacgctcaaaa |
45178173 |
T |
|
| Q |
260 |
atacctcccaatgcagaactacggcactaatgcaaaatgacagtttgtgacaaggaattataagttagctt-ctaccacaaacaaaacaactggaaaaat |
358 |
Q |
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|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
45178174 |
atacctcctaatgcagaactacggcactaatacaaaatgacagtttgtgacaaggaattataagttagctttctaccacaaacaaaacaactggaaaaat |
45178273 |
T |
|
| Q |
359 |
ttatctgtcaatctatttgttgtgtcgtcagtggcctctataattgcctcctgctattacaagaagaatacagtcaacacaaactagatagaaatgtatt |
458 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45178274 |
ttatctgtcaatctatttgttgtgtcgtcattggcctctataattgcctcctgctattacaagaagaatacagtcaacacaaactagatagaaatgtatt |
45178373 |
T |
|
| Q |
459 |
taattgagtaggaatttgaatgtacataggaaagatgattttaagaaaaatgtatattgtgttacac----aaataaataaaaacagacatatcaaaaca |
554 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
45178374 |
taattgagtaggaatttgaatgtacataggaaagatgattttaagaaaaatgtatattgtgttacacaaataaataaataaaaacagacatatcaaaaca |
45178473 |
T |
|
| Q |
555 |
attgtaaaattcatctttcctattttaaatcaattcnnnnnnntaggataagatataaagtgctaatttgtaggattccgccattgtgaataaatatcct |
654 |
Q |
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|||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||| ||||||||||| |||| | |||||| |
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| T |
45178474 |
attgtaaaattcatctttcctattttaaatcaattcaaaaaaataagacaagatataaagtgctaatttgtagggttccgccattgcgaatgagtatcct |
45178573 |
T |
|
| Q |
655 |
cttcatttctcaaaataaataga |
677 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
45178574 |
cttcatttctcaaaataaataga |
45178596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 671 - 789
Target Start/End: Original strand, 45178625 - 45178743
Alignment:
| Q |
671 |
aaatagaaggtgtatcccaccaccatccattgttttaactatgttgttgctatataaacaaattctagatagtagcaaatgtnnnnnnngaaacacagat |
770 |
Q |
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| T |
45178625 |
aaatagacagtgtatcccaccaccatccattgttttaactatgttgttgctatataaacaaattctagatagtagcaaatgtaaaaaatgaaacacagat |
45178724 |
T |
|
| Q |
771 |
cttatttgatacaacctat |
789 |
Q |
| |
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||||||||||| ||||||| |
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| T |
45178725 |
cttatttgatagaacctat |
45178743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 45177846 - 45177906
Alignment:
| Q |
9 |
gaagaatatgtccaatattatttatccagaaattgttgaaagatccatcaccaatagtgct |
69 |
Q |
| |
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|
| T |
45177846 |
gaagaatatgtccaatattatttatccagaaattgttgaaagatccatcaccaatagtgct |
45177906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 103
Target Start/End: Original strand, 45178009 - 45178046
Alignment:
| Q |
66 |
tgcttttgccaataccaaaatgtgcattttagcaagtt |
103 |
Q |
| |
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| T |
45178009 |
tgcttttgccaataccaaaatgtgcattttagcaagtt |
45178046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 359 - 459
Target Start/End: Original strand, 45171387 - 45171487
Alignment:
| Q |
359 |
ttatctgtcaatctatttgttgtgtcgtcagtggcctctataattgcctcctgctattacaagaagaatacagtcaacacaaactagatagaaatgtatt |
458 |
Q |
| |
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|||||||||||| || || || ||||||| || ||||||||| | ||||||||| ||||| |||||||| ||||| ||||||| || ||||||| ||| |
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| T |
45171387 |
ttatctgtcaattcatctgctgcgtcgtcattgacctctataacaggctcctgctaatacaaaaagaataccgtcaaaacaaactggacagaaatgcatt |
45171486 |
T |
|
| Q |
459 |
t |
459 |
Q |
| |
|
| |
|
|
| T |
45171487 |
t |
45171487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 161
Target Start/End: Original strand, 5904885 - 5904916
Alignment:
| Q |
130 |
atttttggtcctataaaaataaatcacacttt |
161 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
5904885 |
atttttggtcctataaaaataaatcacacttt |
5904916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 19927993 - 19928034
Alignment:
| Q |
121 |
attaattaaatttttggtcc-tataaaaataaatcacacttt |
161 |
Q |
| |
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| T |
19927993 |
attaattaagtttttggtccctataaaaataaatcacacttt |
19928034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 161
Target Start/End: Original strand, 10895549 - 10895594
Alignment:
| Q |
117 |
aaggattaattaaatttttggtcc-tataaaaataaatcacacttt |
161 |
Q |
| |
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|||| |||||||| |||||||||| ||||||||||||||||||||| |
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| T |
10895549 |
aagggttaattaagtttttggtccctataaaaataaatcacacttt |
10895594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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