View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_low_21 (Length: 452)
Name: NF2014_low_21
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 21 - 433
Target Start/End: Complemental strand, 34287003 - 34286588
Alignment:
| Q |
21 |
aaaatagcagtaactttcacaaatttatctcatcttccgtgtgatagagacggtaaaaattctacatataagataagattaacatagttgattctcaaaa |
120 |
Q |
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| T |
34287003 |
aaaatagcagtaactttcagaaatttatctcatcttccgtgtgatagagacggtaaaaattttacatataagataaaattaacatagttgattctcaaaa |
34286904 |
T |
|
| Q |
121 |
taagtaaacttgattctcaaaattgtgaacatgagatacaatagttgatcgacttgataaatacatccttaattacatcaattaacatagttacaa--tg |
218 |
Q |
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| T |
34286903 |
taagtaaacttgattctcaaaattgtgaacatgagatacaatagttgatcgacttgataaatacatccttaattgcatcaattaacatagttacaatttt |
34286804 |
T |
|
| Q |
219 |
nnnnnnnnnngcaaaaacatagctacaatgttaatttgtttttattagtaattgttaaaa-atatgatatgacgtaatnnnnnnntagactatgatgtga |
317 |
Q |
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| T |
34286803 |
ttatttttttgcaaaaacatagctacaatgttaatttgtgtttattagtaattgttaaaagatatgatatgacgtaataaaaaaacagactatgatgtga |
34286704 |
T |
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| Q |
318 |
cacgttaaataaatatgtggtttttaagtgaatctcacgttgatttaaaaattacttttagtttacattaatgtatgcaattaacatgctacataaatat |
417 |
Q |
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| T |
34286703 |
cacgttaaataaatatgtgatttttaagtgaatctcacgttgatttaaaaattacttttagtttacataaatgtatgcaattaacatgctacataaatat |
34286604 |
T |
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| Q |
418 |
ttgctaatgtggagtt |
433 |
Q |
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| T |
34286603 |
ttgctaatgtggagtt |
34286588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 336
Target Start/End: Original strand, 48344783 - 48344815
Alignment:
| Q |
304 |
agactatgatgtgacacgttaaataaatatgtg |
336 |
Q |
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| T |
48344783 |
agactatgatgtgacacgttaaatgaatatgtg |
48344815 |
T |
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