View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2014_low_22 (Length: 451)
Name: NF2014_low_22
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_low_22 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 20 - 432
Target Start/End: Complemental strand, 19755375 - 19754963
Alignment:
| Q |
20 |
tctagtcctcccaaagatgatgaagaccgagagaaaatgctttctgaacctcctcaagatttgaatgctaaaagtgttgaagatgatcaacaacacattt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
19755375 |
tctagtcctcccaaagatgatgaagacccagagaaaatgctttctgaacctcctcaagatttgaatgataaaagtgttgaagatgatcaacaacacattg |
19755276 |
T |
|
| Q |
120 |
atgaagaaaatgaagggggtccatctccggtcgaaggtggaaaaagtaaagaacctcgtgggttgaactctgaagatgatacaaagcacactgacactga |
219 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19755275 |
atgaagaaaatgaagggggtccatctctggtcgaaagtggaaaaagtaaagaacctcgtgggttgaactctgaagatgatacaaagcacactgacactga |
19755176 |
T |
|
| Q |
220 |
tggggaaggtcgtaaagaatatgtcaaagaatctaaagatgaatctaaacaagattctccaaagacaaaatctcctactccagtgacaaattctaccact |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
19755175 |
tggggaaggtcgtaaagaatatgtcaaagaatctaaagatgaatctaaacaagattctccaaagacaaaatctcctactcgagtgacaaattctaccagt |
19755076 |
T |
|
| Q |
320 |
gtgactataagtcaagaggagtttgatgtgctgaaagaacgtgacccttttgaggcccttgatcttatgttggttggtaatatcctcccttcaaatactg |
419 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19755075 |
gtgacaataagtcaagaggagtttgatgtgctgaaagaacgtgacccttttgaggcccttgatcttatgttggttggtaatatcctcccttcaaatactg |
19754976 |
T |
|
| Q |
420 |
acacagagtcttc |
432 |
Q |
| |
|
||||||||||||| |
|
|
| T |
19754975 |
acacagagtcttc |
19754963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 159
Target Start/End: Original strand, 8135128 - 8135228
Alignment:
| Q |
59 |
ctttctgaacctcctcaagatttgaatgctaaaagtgttgaagatgatcaacaacacatttatgaagaaaatgaagggggtccatctccggtcgaaggtg |
158 |
Q |
| |
|
|||||||| | | ||||||||| ||||| | |||| ||||||||||||| || |||| | |||| ||| | |||||||||||||||| |||||| ||| |
|
|
| T |
8135128 |
ctttctgatcattctcaagattcaaatgccagaagtattgaagatgatcagcatcacactgatgaggaagacgaagggggtccatctctagtcgaaagtg |
8135227 |
T |
|
| Q |
159 |
g |
159 |
Q |
| |
|
| |
|
|
| T |
8135228 |
g |
8135228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University