View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_low_24 (Length: 435)
Name: NF2014_low_24
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 4 - 417
Target Start/End: Original strand, 43585718 - 43586132
Alignment:
| Q |
4 |
actatctagcattcaaactaattctactaattccactttttctgcctttccatgcttccattacacatgccttctatccagccagacttctcataaggtg |
103 |
Q |
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| T |
43585718 |
actatctagcattcaaactaattctactaattccactttttctgcctttccatgcttccattacacatgccttctaaccagccagacttctcataaggtg |
43585817 |
T |
|
| Q |
104 |
aacctgcaaaataagatgaattcaaacttagaaactttagaaaatataatatcatcaaggttttagtttttaatttgcaatttgtaggaattgagttcta |
203 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43585818 |
aacctgcaaaataagataagttcaaacttagaaactttagaaaatataatatcatcaaggttttagtttttaatttgcaatttgtaggaattgagttcta |
43585917 |
T |
|
| Q |
204 |
aatttcaacacaatgaacatttagcacagataattattaggagggatgcaaaatccattacaatgtccaagaaagactttcattacatggagcacatatt |
303 |
Q |
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| T |
43585918 |
aatttcaacacaatgaacatttagcacagataattattaggagagatgcaaaatccattacaatgtccaagaaagactttcattacatggagcacatatt |
43586017 |
T |
|
| Q |
304 |
gaaatataaattaggaaattaggatgtt-agagatatagaaaacagaaacaagatagacgcatgaatgaaacagttatatctcaacacagaaactattat |
402 |
Q |
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||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
43586018 |
gaaatataaattaggaatttaggatgttaagagatatagaaaacagaaacaagatagacacatgaatgaaacagttatatcccaacacagaaactattat |
43586117 |
T |
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| Q |
403 |
tacttctctaacaaa |
417 |
Q |
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| T |
43586118 |
tacttctctaacaaa |
43586132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 43586331 - 43586613
Alignment:
| Q |
1 |
ctaactatctagcattcaaactaattctactaattccactttttctgcctttccatgcttccattacacatgccttctatccagccagacttctcataag |
100 |
Q |
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|||||||||| |||||||||||||||| ||||||| ||||||| | |||| | ||||||| ||| ||||||||| |||||||| ||| ||||||| |
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| T |
43586331 |
ctaactatctgacattcaaactaattctgctaattcaactttttttaccttgcttggcttccactacttgtgccttctaaccagccagtcttgtcataag |
43586430 |
T |
|
| Q |
101 |
gtga-----acctgcaaaataagatgaattcaaacttagaaactttagaaaatataatatcatcaaggttttagtttttaatttgcaatttgtaggaatt |
195 |
Q |
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||| |||||||||||||||| |||| |||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
43586431 |
ctgatgatgacctgcaaaataagatatattcgaacttagaaact--agaaaatataatatcatcaagattttggtttttaatttgcaatttgtaggaatt |
43586528 |
T |
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| Q |
196 |
gagttctaaatttcaacacaatgaacatttagcacagataattattaggagggatgcaaaatccattacaatgtccaagaaagac |
280 |
Q |
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| T |
43586529 |
gaattctaaatttcaacacaatgaacatttagcacaagtaattatcaggagggatgcaaattccattacaatttgcaagaaagac |
43586613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 140 - 216
Target Start/End: Original strand, 43565412 - 43565488
Alignment:
| Q |
140 |
ttagaaaatataatatcatcaaggttttagtttttaatttgcaatttgtaggaattgagttctaaatttcaacacaa |
216 |
Q |
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|||||||||| ||||| |||||| |||| |||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
43565412 |
ttagaaaatagaatattatcaagattttggtttttaatttgcagtttgtaggaattgaattctaaatttcaacacaa |
43565488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 140 - 216
Target Start/End: Complemental strand, 43474836 - 43474760
Alignment:
| Q |
140 |
ttagaaaatataatatcatcaaggttttagtttttaatttgcaatttgtaggaattgagttctaaatttcaacacaa |
216 |
Q |
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||||||||||||||||||| ||| ||| |||||||||||||| |||||||||||||| || ||||||||||||||| |
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| T |
43474836 |
ttagaaaatataatatcattaagaatttggtttttaatttgcagtttgtaggaattgaattttaaatttcaacacaa |
43474760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 319
Target Start/End: Original strand, 43572406 - 43572474
Alignment:
| Q |
251 |
gcaaaatccattacaatgtccaagaaagactttcattacatggagcacatattgaaatataaattagga |
319 |
Q |
| |
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||||||||||||||||| |||| |||| |||||||||||| |||||||||| ||||||||| ||||| |
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| T |
43572406 |
gcaaaatccattacaattagcaagcaagattttcattacatgaagcacatattcaaatataaagtagga |
43572474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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