View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_low_27 (Length: 416)
Name: NF2014_low_27
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 64 - 400
Target Start/End: Original strand, 8049914 - 8050249
Alignment:
| Q |
64 |
gtaggcggtgcctcaaacaacacatgagattctggttcctattctgcaatttaaaatgcatcacctaactatataatatacataatattaaaaaacatgt |
163 |
Q |
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| T |
8049914 |
gtaggcggtgcctcaaacaacacatgagattctggttcctattccgcaatttaaaatgcatcacctaactatataatatacata-tattaaaaaacatgt |
8050012 |
T |
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| Q |
164 |
atttaattcgtactttagatatgtaatatgtaatagaaccaaagaaaatattcataagaaagagaataatactatgattgcaaatatcataatggctgac |
263 |
Q |
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| T |
8050013 |
atttaattcgtactttagatatgtaatatgtaatagaaccaaagaaaatattcataagaaagagaataatactatgattgcaaatatcataatggctgac |
8050112 |
T |
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| Q |
264 |
gcaactaaacataccactattcaattttattttttgattctaaaaaagacataaatggtgggtcaagtctttgggactgttctgtttataaccattccac |
363 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8050113 |
gcaactaaacacaccactattcaattttattttttgattctaaagaagacataaatggtgggtcaagtctttgggactgttctgtttataaccattccac |
8050212 |
T |
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| Q |
364 |
ttgcaatttgattctatgttttcactaagaaacaaag |
400 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
8050213 |
ttgcaatttgattctatgttttcactaagaaacaaag |
8050249 |
T |
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