View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_low_28 (Length: 410)
Name: NF2014_low_28
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 18 - 404
Target Start/End: Original strand, 34547670 - 34548060
Alignment:
| Q |
18 |
tcaacatggttgtttaatttatttttacttgtcttacttattactagttattatttgatnnnnnnnn-----cttattactagttattagaatttcggat |
112 |
Q |
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| T |
34547670 |
tcaacatggttgtttaatttatttttacttgtcttacttattactagttattattggataaaaaaaaaaaaacttattactagttattagaatttcggat |
34547769 |
T |
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| Q |
113 |
tgagattggttcaaaccttactcaatgagattgtaagatgagaaatgttcccacttacaaagctaacttcaaacattatcttatccaatattacattctt |
212 |
Q |
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| T |
34547770 |
tgagattggttcaaaccttactcaatgagattgtaagatgagaaatgttcccacttacaaagctaacttcaaacattatcttattcaatattacattctt |
34547869 |
T |
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| Q |
213 |
actcgatcacgttaaagataaaatgttcaaaatgtgatctgagtgagccgataatagtaatctaatagcaggtgattcaatgagttttagatggatttta |
312 |
Q |
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||||||||| | |||||| |||||||| ||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
34547870 |
actcgatca-gctaaagacaaaatgtttaaagtgtgatatgagtgagccgataatagtaatctaatagcaggcgattcaatgagttttagatggatttta |
34547968 |
T |
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| Q |
313 |
accacgtcgtctgattttggatctaattcaatctttacaaaatggctagtaaggtgatgatttctcccacataaaacacatattcatctcac |
404 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34547969 |
actacgtcgtctgattttggatctaattcaatctttacaaaatggctagtaaggtgatgatttctcccacataaaacacatattcatgtcac |
34548060 |
T |
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