View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_low_29 (Length: 403)
Name: NF2014_low_29
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 11 - 388
Target Start/End: Complemental strand, 41000243 - 40999869
Alignment:
| Q |
11 |
cataggatgttggcagaaataggatgtctttcagtactcaatgaagtgtacttgcaagaattgtcatctgccatgtcttgagtacagcacagaattttgg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
41000243 |
cataggatgttggcagaaataggatgtctttcagtactcaatgaagtgtacttgcaagaattgtcatctgccatgtcttgag-----cacagaattttgg |
41000149 |
T |
|
| Q |
111 |
gtccgaaagggtcttgg--atcatcacattaaactttaagcaattacgcaaatgatactcttaagtacactttatattcctgctgcataacattaacagg |
208 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
41000148 |
gtccgaaagggtcttggggatcatcacattaaactttaagcaattacgcaaatgatactcttaagtacactttatattcctgctgcgtaacattaacagg |
41000049 |
T |
|
| Q |
209 |
atgtcgcgaacacaattacggtcaaatataacttaattgcttatttatagagaaagatcaagaaaaatgagtggtttaaactaataatgatttgaatttg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
41000048 |
atgtcgcgaacacaattacggtcaaatataacttaattgcttatttatagagaaagatcaagaaaaattagtggtttaaactaataatgatttgaatttg |
40999949 |
T |
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| Q |
309 |
aacggtctctaacatcatatttatgataagatgtgataaattatgaaagttcgatgcatgtcatataataaggttgttct |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
40999948 |
aacggtctctaacatcatatttatgataagatgtgataaattatgaaagttcgacgcatgtcatataataaggttgttct |
40999869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 11 - 388
Target Start/End: Complemental strand, 20852582 - 20852208
Alignment:
| Q |
11 |
cataggatgttggcagaaataggatgtctttcagtactcaatgaagtgtacttgcaagaattgtcatctgccatgtcttgagtacagcacagaattttgg |
110 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
20852582 |
cataggatgttggcagaaataggatgtctttcagtactcaatgaagtgtacttgcaagaattgtcatctgccatgtcttgag-----cacagaattttgg |
20852488 |
T |
|
| Q |
111 |
gtccgaaagggtcttgg--atcatcacattaaactttaagcaattacgcaaatgatactcttaagtacactttatattcctgctgcataacattaacagg |
208 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
20852487 |
gtccgaaagggtcttggggatcatcacattaaactttaagcaattacgcaaatgatactcttaagtacactttatattcctgctgcgtaacattaacagg |
20852388 |
T |
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| Q |
209 |
atgtcgcgaacacaattacggtcaaatataacttaattgcttatttatagagaaagatcaagaaaaatgagtggtttaaactaataatgatttgaatttg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
20852387 |
atgtcgcgaacacaattacggtcaaatataacttaattgcttatttatagagaaagatcaagaaaaattagtggtttaaactaataatgatttgaatttg |
20852288 |
T |
|
| Q |
309 |
aacggtctctaacatcatatttatgataagatgtgataaattatgaaagttcgatgcatgtcatataataaggttgttct |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
20852287 |
aacggtctctaacatcatatttatgataagatgtgataaattatgaaagttcgacgcatgtcatataataaggttgttct |
20852208 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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