View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_low_3 (Length: 734)
Name: NF2014_low_3
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_low_3 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 19 - 724
Target Start/End: Complemental strand, 41919980 - 41919276
Alignment:
| Q |
19 |
cttacttctctaaattatgtatttgaattgattctggtaatggttgcaggggaacccatcccaatcgtacaacaattcgtccaacatttacatccacctt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41919980 |
cttacttctctaaattatgtatttgaattgattctggtaatggttgcagggggacccatcccaatcgtacaacaattcgtccaacatttacatccacctt |
41919881 |
T |
|
| Q |
119 |
tcaaaagtnnnnnnnntatatatttatctaacaaaaatagtttcattcattaaaacaagaatttgtgtctacttataatcttaccggaaaagaaatatgt |
218 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
41919880 |
tcaaaagtaaaaaa---atatatttatctaacaaaaatagtttcattcattaaaacaagaatttgtgtctacttatattcttaccggaaaagaaatatgt |
41919784 |
T |
|
| Q |
219 |
tgaagagttaaaagccttaaacattcaacacttttcaaacccaatccaaatatgctcaaaaaatattacctataaaatgaacgtacattttgcttgattn |
318 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
41919783 |
tgaagagttaaaagccttaaacattccacacttttcaaacccaatccaaatatgctcaaaaaatattccctataaaatgaac----attttgcttgatta |
41919688 |
T |
|
| Q |
319 |
nnnnnnttaaactcatctggatgcctaatatagacatagtcacatagatgcttatacttactttgcttcctttggtggtatatcttttaaccattctaga |
418 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| | |
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| T |
41919687 |
aaaaa---aaactcatctggatgcctaatatagacatagtcacatagatgattatacttactttgcttcatttggtggtatatcttttaaccattctaaa |
41919591 |
T |
|
| Q |
419 |
ttcatgcttccatggttaaccataaatcccttcaatgcagcctacaaatatataatgtacgtacgtactaattataattatctcaataataacatgtcaa |
518 |
Q |
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|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
41919590 |
ttcatgcttccatggttaaccataaatcccttcaatgcaacctacaaatatataatgtacgtac----taattataattatctcaataataacatgtcaa |
41919495 |
T |
|
| Q |
519 |
aagttaaaaactaaatatttttt--------------acctgaattttataagcaattatgttttgttgaccacgctttttaatagctgtagcaacttca |
604 |
Q |
| |
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|||||| | | || ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
41919494 |
aagttatata-tatatattattattaactacaaactaacctgaattttataagcaattatgttttgttgaccacgctttttaatagctgcagcaacttca |
41919396 |
T |
|
| Q |
605 |
ttaacatttgcatctcttactgcttcccaatcaacagagtccgcatgatcaatgtgttgatcacttttagagtgaatttttcttagtgtttcccaatgtt |
704 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
41919395 |
ttaacatttgcatctcttactgcttcccaatcaacagagtccgcatgatcaatgtgttgatcacttttagagtggatttttcttagtgtttcccaatgtt |
41919296 |
T |
|
| Q |
705 |
gcattttcttttctagtatt |
724 |
Q |
| |
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|||||||||||||||||||| |
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| T |
41919295 |
gcattttcttttctagtatt |
41919276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 90; Significance: 4e-43; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 147 - 299
Target Start/End: Complemental strand, 1689347 - 1689197
Alignment:
| Q |
147 |
taacaaaaatagtttcattcattaaaacaagaatttgtgtctacttataatcttaccggaaaagaaatatgttgaagagttaaaagccttaaacattcaa |
246 |
Q |
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|||||||||||| ||||| ||| ||||||||||||||||||| | ||| ||||||||||||||||||||||||||| |||||||| ||||||||||| | |
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| T |
1689347 |
taacaaaaatagcttcatccataaaaacaagaatttgtgtcttcatat--tcttaccggaaaagaaatatgttgaagtgttaaaagtcttaaacattcca |
1689250 |
T |
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| Q |
247 |
cacttttcaaacccaatccaaatatgctcaaaaaatattacctataaaatgaa |
299 |
Q |
| |
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|||||||||||||||| ||||||||| |||||| ||||| ||||||| ||||| |
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| T |
1689249 |
cacttttcaaacccaaaccaaatatgttcaaaagatattccctataacatgaa |
1689197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 1689490 - 1689382
Alignment:
| Q |
18 |
acttacttctctaaattatgtatttgaattgattctggtaatggttgcaggggaacccatcccaatcgtacaacaattcgtccaacatttacatccacct |
117 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
1689490 |
acttactgttctaaattatgtatttgaattgattctggtaagggttgtaggggaacccatcccaatcttacaacaatccgtccaacatttacatccacct |
1689391 |
T |
|
| Q |
118 |
ttcaaaagt |
126 |
Q |
| |
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||||||||| |
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| T |
1689390 |
ttcaaaagt |
1689382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 525 - 716
Target Start/End: Complemental strand, 1688995 - 1688804
Alignment:
| Q |
525 |
aaaactaaatattttttacctgaattttataagcaattatgttttgttgaccacgctttttaatagctgtagcaacttcattaacatttgcatctcttac |
624 |
Q |
| |
|
||||||| ||||||| |||||| ||||| | |||||| ||||| |||||||||||| ||||||||||| |||||||||| ||| || |||| |||||| |
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| T |
1688995 |
aaaactatatattttgtacctgtatttttttagcaataatgttatgttgaccacgcattttaatagcttcagcaacttcaccaactttggcatttcttac |
1688896 |
T |
|
| Q |
625 |
tgcttcccaatcaacagagtccgcatgatcaatgtgttgatcacttttagagtgaatttttcttagtgtttcccaatgttgcattttctttt |
716 |
Q |
| |
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|||||||||||||| ||| ||| |||| ||||||||| |||||||| || ||| ||||||||||||| ||||| | |||| ||||||||| |
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| T |
1688895 |
tgcttcccaatcaatagaatccacatggtcaatgtgtcgatcacttctactgtggatttttcttagtgcctcccacttttgccttttctttt |
1688804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 572 - 642
Target Start/End: Complemental strand, 1305195 - 1305125
Alignment:
| Q |
572 |
tgaccacgctttttaatagctgtagcaacttcattaacatttgcatctcttactgcttcccaatcaacaga |
642 |
Q |
| |
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|||||||| |||||||||||| |||| ||||| ||| | ||||||| |||||| | ||||||||||||||| |
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| T |
1305195 |
tgaccacggtttttaatagctttagccacttctttagcttttgcatttcttaccgtttcccaatcaacaga |
1305125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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