View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_low_30 (Length: 402)
Name: NF2014_low_30
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 30497871 - 30498258
Alignment:
| Q |
1 |
gacaatacctatcttatggtcgaagtttagattatcaagaaccctttcctctaaaaaccgaagagttnnnnnnnnnnnnnnnnnnntatttgcattgata |
100 |
Q |
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| T |
30497871 |
gacaatacctatcttatggtcgaagtttagattatcaagaactctttcctctaaaaaccgaagggttaaaaaaaatggtaaaaaaatatttgcattgaga |
30497970 |
T |
|
| Q |
101 |
ctaaatttaga--atatacatgcactttctatttatatgcaatttttgacttttctttggtttgatcagttaagcctaaactcaaattctaaaaaatgag |
198 |
Q |
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|||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30497971 |
ctaaatttggattatatacatgcactttttatttatatgcaatttttgacttttctttggtttgatcagttaagcctaaactcaaattctaaaaaatgag |
30498070 |
T |
|
| Q |
199 |
tgttagcttccttttctaagaacatcctgtagcaccaaacaattggagaagttgaccagctctagttgatgagaaaagtataactnnnnnnntgaacaag |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30498071 |
tgttagcttccttttctaagaacatcctgtagcaccaaacaattggagaagttgaccagctctagttgatgagaaaagtataactaaaaaaatgaacaag |
30498170 |
T |
|
| Q |
299 |
aattttcaaaacaaggtccacattcaattaagaaaatagcatcttcttcaaaccaatatggtagactcattaggaagaaagttggaaa |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30498171 |
aattttcaaaacaaggtccacattcaattaagaaaatagcatcttcttcaaaccaatatggtagactcattaggaagaaagttggaaa |
30498258 |
T |
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