View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_low_31 (Length: 401)
Name: NF2014_low_31
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 392
Target Start/End: Original strand, 8235409 - 8235783
Alignment:
| Q |
18 |
cttagcaaacaggataggtgcctcagctgatatcatactcactccttcttctgatttcattatcttcttaatccttgctaatggcaagccattatttttg |
117 |
Q |
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| T |
8235409 |
cttagcaaacagaataggtgcctcagctgatatcatactcactccttcttctgctttcattatcttcttaatccttgctaatggcaagccattatttctg |
8235508 |
T |
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| Q |
118 |
aaatcagcaaccttctcaacttcttcattttgttttgcccagaaggtgccaagttttttctgcaattcttgnnnnnnnngttgttggtgggagatttctt |
217 |
Q |
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| T |
8235509 |
aaatcaacaaccttctcaacttcttcattttgttttgcccagaaggtgccaagttttttctgcaattcttgttgtttttgttgttggtgggagatttctt |
8235608 |
T |
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| Q |
218 |
ggacttgaactctactcatgtaggatgaaaaggcagaagcatttgcagtgtgaaacaaagggcgagacactgacactatttgattttgtgttggtgtatc |
317 |
Q |
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| T |
8235609 |
ggacttgaactctactcatgtaggatgaaaaggcagaagcatttgcagtgtgaaacaaagggcgagacactgacactatttgattttgtgtttgtgtatc |
8235708 |
T |
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| Q |
318 |
attccttctttcctctggtttcacttgtgtcttttgatccatatttgttgtttggactacaaaatatatattctt |
392 |
Q |
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| T |
8235709 |
attccttctttcctctggtttcacttgtgtcttttgatccatatttgttgtttggactacaaaatatatattctt |
8235783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 392
Target Start/End: Original strand, 8447645 - 8447696
Alignment:
| Q |
341 |
cttgtgtcttttgatccatatttgttgtt-tggactacaaaatatatattctt |
392 |
Q |
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| T |
8447645 |
cttgtgtcttttgatccatgtt-gttattatggactacaaaatatatattctt |
8447696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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