View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2014_low_32 (Length: 393)

Name: NF2014_low_32
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2014_low_32
NF2014_low_32
[»] scaffold0082 (1 HSPs)
scaffold0082 (56-143)||(30701-30788)
[»] scaffold0212 (2 HSPs)
scaffold0212 (273-347)||(27388-27462)
scaffold0212 (212-245)||(15709-15742)
[»] scaffold0015 (1 HSPs)
scaffold0015 (273-347)||(214810-214884)
[»] chr8 (1 HSPs)
chr8 (273-347)||(21957964-21958038)
[»] chr4 (1 HSPs)
chr4 (273-345)||(24749154-24749226)
[»] scaffold0108 (1 HSPs)
scaffold0108 (145-211)||(971-1037)
[»] chr2 (2 HSPs)
chr2 (277-346)||(32858357-32858426)
chr2 (212-245)||(36499550-36499583)
[»] chr5 (1 HSPs)
chr5 (287-317)||(42451549-42451579)


Alignment Details
Target: scaffold0082 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0082
Description:

Target: scaffold0082; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 56 - 143
Target Start/End: Original strand, 30701 - 30788
Alignment:
Q  56 gctttgaagatagtaagtaagagtagtggcattctcatcaaaaggataagtaagttcgcaatccagtgataaagtgaaaaaaggtgct 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30701 gctttgaagatagtaagtaagagtagtggcattctcatcaaaaggataagtaagttcgcaatccagtgataaagtgaaaaaaggtgct 30788  T

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Target: scaffold0212 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold0212
Description:

Target: scaffold0212; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 273 - 347
Target Start/End: Complemental strand, 27462 - 27388
Alignment:
Q  273 ccagaaagatattggactcttttttctttgtcggctgtaaaccaagttgcaagaccgggaatgagctttacaacc 347  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27462 ccagaaagatattggactcttttttctttgtcggctgtaaaccaagttgcaagaccgggaatgagctttacaacc 27388  T

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Target: scaffold0212; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 212 - 245
Target Start/End: Original strand, 15709 - 15742
Alignment:
Q  212 ggtgcaggatccgaagcggtggctgctacaagaa 245  Q
    ||||||||||||||||||||||||||||||||||    
T  15709 ggtgcaggatccgaagcggtggctgctacaagaa 15742  T

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Target: scaffold0015 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 273 - 347
Target Start/End: Complemental strand, 214884 - 214810
Alignment:
Q  273 ccagaaagatattggactcttttttctttgtcggctgtaaaccaagttgcaagaccgggaatgagctttacaacc 347  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  214884 ccagaaagatattggactcttttttctttgtcggctgtaaaccaagttgcaagaccgggaatgagctttacaacc 214810  T

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Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 273 - 347
Target Start/End: Original strand, 21957964 - 21958038
Alignment:
Q  273 ccagaaagatattggactcttttttctttgtcggctgtaaaccaagttgcaagaccgggaatgagctttacaacc 347  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21957964 ccagaaagatattggactcttttttctttgtcggctgtaaaccaagttgcaagaccgggaatgagctttacaacc 21958038  T

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Target: chr4 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 273 - 345
Target Start/End: Original strand, 24749154 - 24749226
Alignment:
Q  273 ccagaaagatattggactcttttttctttgtcggctgtaaaccaagttgcaagaccgggaatgagctttacaa 345  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  24749154 ccagaaagatattggactcttttttctttgtcggctgtaaaccaagttgcaagatcgggaatgagctttacaa 24749226  T

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Target: scaffold0108 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 145 - 211
Target Start/End: Complemental strand, 1037 - 971
Alignment:
Q  145 tcaggtcaggctgagctgtagcactgatcgttgagtgatcacatagctgacgtcaacagatcttttc 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1037 tcaggtcaggctgagctgtagcactgatcgttgagtgatcacatagctgacgtcaacagatcttttc 971  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 277 - 346
Target Start/End: Original strand, 32858357 - 32858426
Alignment:
Q  277 aaagatattggactcttttttctttgtcggctgtaaaccaagttgcaagaccgggaatgagctttacaac 346  Q
    ||||||||| || ||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||    
T  32858357 aaagatattagaatcttttttctttgtcggatgtaaaccaagttgcaagaccgagaatgagctttgcaac 32858426  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 212 - 245
Target Start/End: Complemental strand, 36499583 - 36499550
Alignment:
Q  212 ggtgcaggatccgaagcggtggctgctacaagaa 245  Q
    ||||||||||||||||||||||||||||||||||    
T  36499583 ggtgcaggatccgaagcggtggctgctacaagaa 36499550  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 317
Target Start/End: Original strand, 42451549 - 42451579
Alignment:
Q  287 gactcttttttctttgtcggctgtaaaccaa 317  Q
    |||||||||||||||||||||||||||||||    
T  42451549 gactcttttttctttgtcggctgtaaaccaa 42451579  T

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