View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_low_36 (Length: 382)
Name: NF2014_low_36
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 161 - 363
Target Start/End: Complemental strand, 9682893 - 9682691
Alignment:
| Q |
161 |
aatagtgcaaatgatcgttcttgatcagtcattgtgggaatggggagtagcactggttagcataacttttaaacaattggtaaaaa-ttagtagtgtcaa |
259 |
Q |
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| T |
9682893 |
aatagtgcaaatgatcgttcttgatcagtcattgtgggaatggagagtagcactg-ttagcataacctttaaacaattggtaaaaaattagtagtgtcaa |
9682795 |
T |
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| Q |
260 |
attttatgctatcttatatatgtgattggattttattatatcatgacaattttctattaagaattggagacattttnnnnnnntaaaacgagagaagttg |
359 |
Q |
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| T |
9682794 |
attttatgctatcttatatatgtgattggattttattatatcatgacacttttctattaagaattggagacattttaaaaaaataaaacgagagaagttg |
9682695 |
T |
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| Q |
360 |
aaga |
363 |
Q |
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|||| |
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| T |
9682694 |
aaga |
9682691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 6 - 95
Target Start/End: Complemental strand, 9683047 - 9682959
Alignment:
| Q |
6 |
aatcataggaccacactcgacacata--caataggagaccacaattacaggacaaattttctctgtttatcgagataaatggaatgacatct |
95 |
Q |
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| T |
9683047 |
aatcaaaggaccacactcgacacatatacaataggagaccacaattacagtacaaattttctctg---attgagataaattcaatgacatct |
9682959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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