View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_low_38 (Length: 375)
Name: NF2014_low_38
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_low_38 |
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| [»] scaffold0140 (1 HSPs) |
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| [»] scaffold0129 (1 HSPs) |
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Alignment Details
Target: scaffold0140 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 36312 - 36668
Alignment:
| Q |
1 |
ttaaagaagaagctccaatactcaagaaagaaggcaaatttgtttatggttttgttggttgtatcttgggcaatgttcatttcatatctgaagatgtagt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
36312 |
ttaaagaagaagctccaatactcaagaaagaaggcaaatttgtttatggttatgttggttgtattttgggcaatgttcatttcatatatgaagatgtagt |
36411 |
T |
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| Q |
101 |
gtaatgactcggttcaaatgttaaatcaatgttatgaagtttatgacattgttgattgtaatgaaaagaagttgtgtttcttgaatcaatgaaatgaagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36412 |
gtaatgactcggttcaaatgttaaatcaatgttatgaagtttatgacattgttgattgtaatgaaaagaagttgtgtttcttgaatcaatgaaatgaagt |
36511 |
T |
|
| Q |
201 |
ttgtttgtcatgctattgttgtctgcttgttcattactttgtgattcactgttaaagtaatatgattatagttagcaaagttgtagacataattgtgttc |
300 |
Q |
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|||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| | || |
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| T |
36512 |
ttgtttgtcatgctattgttgtatgcttgttcattagtttgtgattcactgttaaagtaatatgattatagtaagcaaagttgtagtcataattatcttg |
36611 |
T |
|
| Q |
301 |
tttcataccaaaatggaccaaaatggtcattactaacaccataacgtaccaagacat |
357 |
Q |
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||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||| |
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| T |
36612 |
tttcatagcaaaatgcaccaaaatggtcattactaacaccataatgtaccaagacat |
36668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 23573619 - 23573754
Alignment:
| Q |
1 |
ttaaagaagaagctccaatactcaagaaagaaggcaaatttgtttatggttttgttggttgtatcttgggcaatgttcatttcatatctgaagatgtagt |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
23573619 |
ttaaagaagaaactccaatactcaagaaagaaggcaaatttgtttatgtttacattggttgtatcttgggcaatgttcattacatatctgacgatgtagt |
23573718 |
T |
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| Q |
101 |
gtaatgactcggttcaaatgttaaatcaatgttatgaa |
138 |
Q |
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|| || ||||||||||||||||||||||||||||||| |
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| T |
23573719 |
gtgat--ctcggttcaaatgttaaatcaatgttatgaa |
23573754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 31815008 - 31814943
Alignment:
| Q |
4 |
aagaagaagctccaatactcaagaaagaaggcaaatttgtttatggttttgttggttgtatcttgg |
69 |
Q |
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||||||||||| ||| | ||||| |||||| | || |||||||||||||||||| |||| |||||| |
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| T |
31815008 |
aagaagaagctacaacattcaaggaagaagacgaacttgtttatggttttgttgattgtttcttgg |
31814943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 13507693 - 13507638
Alignment:
| Q |
2 |
taaagaagaagctccaatactcaagaaagaaggcaaatttgtttatggttttgttg |
57 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
13507693 |
taaagaagaagctccaatactcaaggaagaaggcaaatttgtttatgattttgttg |
13507638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 13507555 - 13507611
Alignment:
| Q |
1 |
ttaaagaagaagctccaatactcaagaaagaaggcaaatttgtttatggttttgttg |
57 |
Q |
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||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||| |
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| T |
13507555 |
ttaaagaagaagctctaatactcaaggaagaatgcaaatttgtttatggttttgttg |
13507611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 3495 - 3429
Alignment:
| Q |
4 |
aagaagaagctccaatactcaagaaagaaggcaaatttgtttatggttttgttggttgtatcttggg |
70 |
Q |
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||||||||||| ||| | ||||| |||||| | || |||||||||||||||||| |||| ||||||| |
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| T |
3495 |
aagaagaagctacaacattcaaggaagaagacgaacttgtttatggttttgttgattgtttcttggg |
3429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 7799453 - 7799387
Alignment:
| Q |
4 |
aagaagaagctccaatactcaagaaagaaggcaaatttgtttatggttttgttggttgtatcttggg |
70 |
Q |
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||||||||||| ||| | ||||| |||||| | || |||||||||||||||||| |||| ||||||| |
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| T |
7799453 |
aagaagaagctacaacattcaaggaagaagacgaacttgtttatggttttgttgattgtttcttggg |
7799387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 19398554 - 19398488
Alignment:
| Q |
4 |
aagaagaagctccaatactcaagaaagaaggcaaatttgtttatggttttgttggttgtatcttggg |
70 |
Q |
| |
|
||||||||||| ||| | ||||| |||||| | || |||||||||||||||||| |||| ||||||| |
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| T |
19398554 |
aagaagaagctacaacattcaaggaagaagacgaacttgtttatggttttgttgattgtttcttggg |
19398488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 22059401 - 22059336
Alignment:
| Q |
4 |
aagaagaagctccaatactcaagaaagaaggcaaatttgtttatggttttgttggttgtatcttgg |
69 |
Q |
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||||||||||| ||| | ||||| |||||| | || |||||||||||||||||| |||| |||||| |
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| T |
22059401 |
aagaagaagctacaacattcaaggaagaagacgaacttgtttatggttttgttgattgtttcttgg |
22059336 |
T |
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