View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_low_40 (Length: 373)
Name: NF2014_low_40
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 3 - 358
Target Start/End: Complemental strand, 43759715 - 43759359
Alignment:
| Q |
3 |
cacagacacacacaggtagatattcttcctagcttagtttttaagtggcattaatgactaatgggcgttacatatacctaataaaaataggaggagtaat |
102 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43759715 |
cacacacacacacaggtagatattcttcctagcttagtttttaagtggcattaatgactaatgggcgttacatatacctaataaaaataggaggagtaat |
43759616 |
T |
|
| Q |
103 |
tggtgggggtagtaccctagaagtgatgggcacaagaactaa-taactagtactggagctataaaaatgccgttttaaagaaagcgatgagtcgaaacat |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43759615 |
tggtgggggtagtaccctagaagtgatgggcacaagaactaaataactagtactggagctataaaaatgccgttttaaagaaagcgatgagtcgaaacat |
43759516 |
T |
|
| Q |
202 |
gaaagggtctaagagttataggtgtccactttgacccttcatagttctccttattacagaaaaacattactaccgccacaactgcattgcatctcacatt |
301 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
43759515 |
gaaagggtctaagagttataggtgtccactttgaaccttcataggtctccttattacagcaaaacattactaccaccacaactgcattgcatctcacatt |
43759416 |
T |
|
| Q |
302 |
tttaattccttgggctctgtgtggaactcctaccttttaatgcttcctctacctcct |
358 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43759415 |
tttaattccttgggctctgtgtggaactcctaccttttaatgcttcctctacctcct |
43759359 |
T |
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