View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_low_41 (Length: 373)
Name: NF2014_low_41
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_low_41 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 2 - 310
Target Start/End: Original strand, 40464186 - 40464495
Alignment:
| Q |
2 |
tgtgtgtagagatatccaattnnnnnnntatcaatttttgtagacgtcaaccacacatatctgctgtaaaataaa---gcacacacatgtatctttttaa |
98 |
Q |
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| T |
40464186 |
tgtgcgtagagatatccaattaaaaaaatatcaatttttgtagaggtcaaccacacat--ctgctgtaaaaaaaaaaagcacacacatgtatctttttaa |
40464283 |
T |
|
| Q |
99 |
aattttaaaatatataacatgattattgagattaacatttataaaatttcaaataaaatttaataatatttgagaaaaccacaaaattccgcggcgtcta |
198 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
40464284 |
aattttaaaatatataacattattattgagattaacatttataaaatttcaaataaaatttaataatatttgagaaaaccacaaaattccgcgtcgtcta |
40464383 |
T |
|
| Q |
199 |
atttcatggggtacagtgagttgaacttcattttcaagtattagggtttgctgctgtagtgaaacaacacagtttcacacagttttcagttatagttatt |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
40464384 |
atttcatggggtacagtgagttgaacttcattttcaaggattagggtttgctgctgtagtgaaacaacatagtttcacacagttttcagttatagttatt |
40464483 |
T |
|
| Q |
299 |
ggatggtattag |
310 |
Q |
| |
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||||||| |||| |
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| T |
40464484 |
ggatggtgttag |
40464495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 300 - 358
Target Start/End: Original strand, 40464776 - 40464834
Alignment:
| Q |
300 |
gatggtattagtgtaactttgtcatacccattcaattgttgggataacaattgtgttat |
358 |
Q |
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| T |
40464776 |
gatggtattagtgtaactttgtcaaacccattcaatggttgggatattaattgtgttat |
40464834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 240 - 286
Target Start/End: Original strand, 45482929 - 45482975
Alignment:
| Q |
240 |
tagggtttgctgctgtagtgaaacaacacagtttcacacagttttca |
286 |
Q |
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| T |
45482929 |
taggatttgctgctctagtgaaacaacacagtttcacacagttttca |
45482975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 258 - 335
Target Start/End: Complemental strand, 50513278 - 50513201
Alignment:
| Q |
258 |
tgaaacaacacagtttcacacagttttcagttatagttattggatggtattagtgtaactttgtcatacccattcaat |
335 |
Q |
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|||||||||||| || |||| |||||||| |||||| |||||||| |||||| | ||||||||||| | ||||||||| |
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| T |
50513278 |
tgaaacaacacaattccacagagttttcaattatagatattggatcgtattattataactttgtcaaatccattcaat |
50513201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 273
Target Start/End: Original strand, 45167607 - 45167635
Alignment:
| Q |
245 |
tttgctgctgtagtgaaacaacacagttt |
273 |
Q |
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| T |
45167607 |
tttgctgctgtagtgaaacaacacagttt |
45167635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 286
Target Start/End: Original strand, 13062447 - 13062493
Alignment:
| Q |
240 |
tagggtttgctgctgtagtgaaacaacacagtttcacacagttttca |
286 |
Q |
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| T |
13062447 |
taggatttgctgctgtagtgaaacaacacaatttcgcacaattttca |
13062493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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