View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_low_45 (Length: 354)
Name: NF2014_low_45
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_low_45 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 17 - 345
Target Start/End: Complemental strand, 1659355 - 1659023
Alignment:
| Q |
17 |
atctacaatgtgaccttaacgtccataaaaggtgcaaagcccgctc-----accataagaaaaaagaggtttctttttaccatgtaacttctttgagtca |
111 |
Q |
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| T |
1659355 |
atctacaatgtgaccttaacatgcataaaaggtgcaaagcccgctcttataaccataagaaaaaagaggtttctttttaccatgaaacttct--gagtca |
1659258 |
T |
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| Q |
112 |
gaaaaattaacta-agatttggattcatcaagattaatgctttcaaagacaactttactctcttcttgcaagaattaaaagtaaacacgattacgacatg |
210 |
Q |
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| T |
1659257 |
gaaaaattaacaagagatttggattcatcaagattaatgctttcaaagacaactttactctcttcttgcaagagttaaaagtaaacacgattacgacatg |
1659158 |
T |
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| Q |
211 |
ataaaggttccatgnnnnnnnttgtgtttgaacgatggaaaattgatcattaagacccgtgaggatttgtagtgcatgatcctctaaatgaaaatcctta |
310 |
Q |
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|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1659157 |
ataaaggttccatgaaaaaaattgtgtttgaacgacggaaaattgatcattaagacccgtgaggatttgtagtgcatgatcctctaaatgaaaatcctta |
1659058 |
T |
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| Q |
311 |
ggattatgcatagctaaacattggcactgatgatg |
345 |
Q |
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|||||| |||||||||||||||||||||||||||| |
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| T |
1659057 |
ggattaggcatagctaaacattggcactgatgatg |
1659023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 223
Target Start/End: Complemental strand, 28062687 - 28062553
Alignment:
| Q |
87 |
tttaccatgtaacttctttgagtcagaaaaattaactaagatttggattcatcaagattaatgctttcaaagacaactttactctcttcttgcaagaatt |
186 |
Q |
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| T |
28062687 |
tttaccagggaacttctttgaatcagcagaattatc-aagagttggattcatcaagattaca-ctttcaaacacatctttactctcttcttgtatgacta |
28062590 |
T |
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| Q |
187 |
aaaagtaaacacgattacgacatgataaaggttccat |
223 |
Q |
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| T |
28062589 |
aggagtaaacacgattaaggcatggtaaaggttccat |
28062553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 223
Target Start/End: Complemental strand, 28073112 - 28072978
Alignment:
| Q |
87 |
tttaccatgtaacttctttgagtcagaaaaattaactaagatttggattcatcaagattaatgctttcaaagacaactttactctcttcttgcaagaatt |
186 |
Q |
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||||||| | ||||||||||| |||| | ||||| | |||| |||||||||||||||||| |||||||| ||| |||||||||||||||| | || | |
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| T |
28073112 |
tttaccagggaacttctttgaatcagcagaattatc-aagagttggattcatcaagattaca-ctttcaaacacatctttactctcttcttgtatgacta |
28073015 |
T |
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| Q |
187 |
aaaagtaaacacgattacgacatgataaaggttccat |
223 |
Q |
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| T |
28073014 |
aggagtaaacacgattaaggcatggtaaaggttccat |
28072978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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