View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_low_46 (Length: 351)
Name: NF2014_low_46
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 13 - 335
Target Start/End: Complemental strand, 31580730 - 31580408
Alignment:
| Q |
13 |
aatatcaaggaaacacaaagtttataacacacaacgactcttggataaggattagagaaatgatgatttgtttggtatggattaaaaaactttaataaag |
112 |
Q |
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| T |
31580730 |
aatatcaaggaaacacaaagtttataacacacaacgactcttggataaggattagagaaatgatgatttgtttggtatggattaaaaaactttaataaag |
31580631 |
T |
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| Q |
113 |
ctaaagtacttttgatacaaaaggaagttaggttttgtgccagcagaaatgatgtttcagcattttgttttctctatcgtatattgtcctttccagcgtt |
212 |
Q |
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| T |
31580630 |
ctaaagtacttttgatacaaaaggaagttaggttttgtgccagcagaaatgatgtttcagcattttgttttctctatcgtatattgtcctttccagcgtt |
31580531 |
T |
|
| Q |
213 |
gtcgcattattatgagaagaagaagaaagatgtattagaaaataaagttttataaaacattggttattttttgtgtgtgatagaagtaagggtcttgtta |
312 |
Q |
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| T |
31580530 |
gtcgcattattatgagaagaagaaaaaagatgtattagaaaataaagttttataaaacattggttattttttgtgtgtgatagaagtaagggtcttgtta |
31580431 |
T |
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| Q |
313 |
acaagtttcttaagggcattgtt |
335 |
Q |
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|||||| ||||||||| |||||| |
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| T |
31580430 |
acaagtgtcttaagggtattgtt |
31580408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 335
Target Start/End: Original strand, 13018455 - 13018491
Alignment:
| Q |
299 |
taagggtcttgttaacaagtttcttaagggcattgtt |
335 |
Q |
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| T |
13018455 |
taagggtcttgttaacaagtgtcctaagggcattgtt |
13018491 |
T |
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