View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_low_47 (Length: 343)
Name: NF2014_low_47
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 6399773 - 6399448
Alignment:
| Q |
1 |
gtataaagcagctgcaaaagctttggataaggggattatttgtgacaatgatgcagtgaaagcatttaaagcaatggactctgacaaagatggcttcata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6399773 |
gtataaagcagctgcaaaagctttggataaggggattatttgtgacaatgatgcagtgaaagcatttaaagcaatggactctgacaaagatggcttcata |
6399674 |
T |
|
| Q |
101 |
gactttaaagagtttatggaaatgttcaatggagagggtagtaagataaaagaagaagatattaagagtgcttttcaagtatttgatataaatggtgatg |
200 |
Q |
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| T |
6399673 |
gactttaaagagtttatggaaatgttcaatggagaaggtagtaagataaaagaagaagatattaagagtgcttttcaagtatttgatataaatggtgatg |
6399574 |
T |
|
| Q |
201 |
ggaaaattagtgctgaggaattgtctcaaatatttaagaggttaggagagagttgtagccttagtgcttgtaagaaaatggtgaaaggggttgatggtga |
300 |
Q |
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| T |
6399573 |
ggaaaattagtgctgaggaattgtctcaaatatttaagaggttaggagagagttgtagccttagtgcttgtaagaaaatggtgaaaggggttgatagtga |
6399474 |
T |
|
| Q |
301 |
tggagatggtcttattgatttgaatg |
326 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
6399473 |
tggagatggtcttattgatttgaatg |
6399448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 6412729 - 6413054
Alignment:
| Q |
1 |
gtataaagcagctgcaaaagctttggataaggggattatttgtgacaatgatgcagtgaaagcatttaaagcaatggactctgacaaagatggcttcata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6412729 |
gtataaagcagctgcaaaagctttggataaggggattatttgtgacaatgatgcagtgaaagcatttaaagcaatggactctgacaaagatggcttcata |
6412828 |
T |
|
| Q |
101 |
gactttaaagagtttatggaaatgttcaatggagagggtagtaagataaaagaagaagatattaagagtgcttttcaagtatttgatataaatggtgatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6412829 |
gactttaaagagtttatggaaatgttcaatggagaaggtagtaagataaaagaagaagatattaagagtgcttttcaagtatttgatataaatggtgatg |
6412928 |
T |
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| Q |
201 |
ggaaaattagtgctgaggaattgtctcaaatatttaagaggttaggagagagttgtagccttagtgcttgtaagaaaatggtgaaaggggttgatggtga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6412929 |
ggaaaattagtgctgaggaattgtctcaaatatttaagaggttaggagagagttgtagccttagtgcttgtaagaaaatggtgaaaggggttgatagtga |
6413028 |
T |
|
| Q |
301 |
tggagatggtcttattgatttgaatg |
326 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
6413029 |
tggagatggtcttattgatttgaatg |
6413054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 6409986 - 6410308
Alignment:
| Q |
1 |
gtataaagcagctgcaaaagctttggataaggggattatttgtgacaatgatgcagtgaaagcatttaaagcaatggactctgacaaagatggcttcata |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| | || ||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
6409986 |
gtataaagcagctgcaaaatctttggataaggggattg---gggatcctgatgcagtgaaagcatttaacgtgatggactctgacaaagatggcttcata |
6410082 |
T |
|
| Q |
101 |
gactttaaagagtttatggaaatgttcaatggagagggtagtaagataaaagaagaagatattaagagtgcttttcaagtatttgatataaatggtgatg |
200 |
Q |
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|||||||||||||| |||||||||||||||||||| | ||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||| |
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| T |
6410083 |
gactttaaagagttcatggaaatgttcaatggagaaaacaataagataaaagaagaggagattaagagtgcttttcaagtatttgatataaatggagatg |
6410182 |
T |
|
| Q |
201 |
ggaaaattagtgctgaggaattgtctcaaatatttaagaggttaggagagagttgtagccttagtgcttgtaagaaaatggtgaaaggggttgatggtga |
300 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||| |
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| T |
6410183 |
ggaaaatcagtgctgaggaattgtctcaaatatttaagaggttaggagagagttgcagccttagtgcttgtaagaaaatggtgaaaggtgtcgatggtga |
6410282 |
T |
|
| Q |
301 |
tggagatggtcttattgatttgaatg |
326 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
6410283 |
tggagatggtcttattgatttgaatg |
6410308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 6405389 - 6405258
Alignment:
| Q |
1 |
gtataaagcagctgcaaaagctttggataaggggattatttgtgacaatgatgcagtgaaagcatttaaagcaatggactctgacaaagatggcttcata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | | || | ||||||||||||||||||||| || ||||||| |||||||||||| |||||| |
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| T |
6405389 |
gtataaagcagctgcaaaagctttggataagggggtag---gggatactgatgcagtgaaagcatttaaggccatggactatgacaaagatggattcata |
6405293 |
T |
|
| Q |
101 |
gactttaaagagtttatggaaatgttcaatggaga |
135 |
Q |
| |
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||||||| ||||||||||||||||||||||||||| |
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| T |
6405292 |
gactttagagagtttatggaaatgttcaatggaga |
6405258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 202 - 265
Target Start/End: Complemental strand, 6403072 - 6403009
Alignment:
| Q |
202 |
gaaaattagtgctgaggaattgtctcaaatatttaagaggttaggagagagttgtagccttagt |
265 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6403072 |
gaaaattagtgctgatgaattgtctcaaatatttaagaggttaggagagagttgtagccttagt |
6403009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 282 - 326
Target Start/End: Complemental strand, 6403007 - 6402963
Alignment:
| Q |
282 |
tgaaaggggttgatggtgatggagatggtcttattgatttgaatg |
326 |
Q |
| |
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||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
6403007 |
tgaaaggtgtcgatggtgatggagatggtcttattgatttgaatg |
6402963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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