View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2014_low_48 (Length: 341)

Name: NF2014_low_48
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2014_low_48
NF2014_low_48
[»] chr6 (10 HSPs)
chr6 (17-323)||(2949576-2949884)
chr6 (184-255)||(2981380-2981451)
chr6 (266-301)||(2981666-2981701)
chr6 (17-65)||(3289195-3289243)
chr6 (17-65)||(35119096-35119144)
chr6 (88-143)||(21917388-21917443)
chr6 (17-62)||(6220341-6220386)
chr6 (123-172)||(19238687-19238736)
chr6 (17-65)||(33346531-33346579)
chr6 (17-88)||(33972491-33972563)
[»] chr1 (12 HSPs)
chr1 (17-66)||(42607787-42607836)
chr1 (13-65)||(6181669-6181721)
chr1 (17-65)||(11394945-11394993)
chr1 (17-65)||(16267768-16267816)
chr1 (17-65)||(13831307-13831355)
chr1 (17-65)||(16267975-16268022)
chr1 (17-65)||(20260481-20260529)
chr1 (32-64)||(25995838-25995870)
chr1 (88-168)||(27580735-27580815)
chr1 (17-65)||(33753501-33753549)
chr1 (17-65)||(50574802-50574850)
chr1 (17-65)||(52412883-52412931)
[»] chr7 (6 HSPs)
chr7 (88-172)||(49013030-49013114)
chr7 (17-65)||(31715906-31715954)
chr7 (13-64)||(47250827-47250878)
chr7 (32-73)||(44447958-44447999)
chr7 (13-65)||(23437205-23437257)
chr7 (13-65)||(43140751-43140803)
[»] chr4 (17 HSPs)
chr4 (87-168)||(8019951-8020032)
chr4 (107-168)||(11777846-11777907)
chr4 (13-65)||(9010786-9010838)
chr4 (17-65)||(45911632-45911680)
chr4 (17-65)||(46620980-46621028)
chr4 (107-150)||(8019530-8019573)
chr4 (19-65)||(21885111-21885157)
chr4 (32-65)||(28570721-28570754)
chr4 (32-65)||(43317179-43317212)
chr4 (97-149)||(7593137-7593189)
chr4 (17-65)||(27347882-27347930)
chr4 (17-65)||(33882234-33882282)
chr4 (17-65)||(45683402-45683450)
chr4 (17-65)||(48210001-48210049)
chr4 (17-65)||(53645504-53645552)
chr4 (17-65)||(54136144-54136192)
chr4 (17-65)||(54191641-54191689)
[»] scaffold0051 (1 HSPs)
scaffold0051 (17-65)||(40405-40453)
[»] chr2 (19 HSPs)
chr2 (88-172)||(3960840-3960924)
chr2 (87-169)||(22311683-22311765)
chr2 (90-172)||(26674112-26674194)
chr2 (13-65)||(4120817-4120869)
chr2 (17-65)||(43183868-43183916)
chr2 (13-64)||(33819677-33819727)
chr2 (17-64)||(40694460-40694507)
chr2 (32-65)||(15137104-15137137)
chr2 (32-65)||(36211403-36211436)
chr2 (13-65)||(13354230-13354282)
chr2 (17-65)||(16736383-16736431)
chr2 (17-65)||(18565119-18565167)
chr2 (17-65)||(25642553-25642601)
chr2 (17-65)||(27132564-27132612)
chr2 (13-65)||(27476648-27476700)
chr2 (17-65)||(28203145-28203193)
chr2 (17-65)||(34820332-34820380)
chr2 (17-65)||(34820564-34820612)
chr2 (17-65)||(36211626-36211674)
[»] chr5 (12 HSPs)
chr5 (11-65)||(40589333-40589387)
chr5 (11-65)||(40589936-40589990)
chr5 (17-65)||(33763193-33763241)
chr5 (19-65)||(5624432-5624478)
chr5 (32-65)||(26289073-26289106)
chr5 (123-172)||(34821943-34821992)
chr5 (17-65)||(334349-334397)
chr5 (17-65)||(7399130-7399178)
chr5 (17-65)||(7399363-7399411)
chr5 (17-65)||(15267525-15267573)
chr5 (13-65)||(25923400-25923452)
chr5 (17-65)||(39706336-39706384)
[»] chr3 (19 HSPs)
chr3 (17-65)||(35580234-35580282)
chr3 (17-65)||(52606181-52606229)
chr3 (13-65)||(52609643-52609695)
chr3 (17-65)||(54107722-54107770)
chr3 (13-64)||(2829689-2829740)
chr3 (19-65)||(21169719-21169765)
chr3 (13-63)||(43899355-43899405)
chr3 (17-63)||(53841311-53841357)
chr3 (17-66)||(40926063-40926112)
chr3 (20-65)||(41208454-41208499)
chr3 (17-66)||(53310007-53310056)
chr3 (17-65)||(12123364-12123412)
chr3 (13-65)||(17273830-17273882)
chr3 (13-65)||(22444467-22444519)
chr3 (17-65)||(27254037-27254085)
chr3 (17-65)||(28688043-28688091)
chr3 (32-64)||(31513917-31513949)
chr3 (17-72)||(33812769-33812825)
chr3 (17-65)||(34630035-34630083)
[»] scaffold0155 (1 HSPs)
scaffold0155 (87-159)||(33791-33863)
[»] chr8 (12 HSPs)
chr8 (17-65)||(31230666-31230714)
chr8 (17-65)||(11198490-11198538)
chr8 (17-65)||(14920696-14920744)
chr8 (17-72)||(23244560-23244616)
chr8 (17-65)||(24456937-24456985)
chr8 (17-65)||(29027253-29027301)
chr8 (17-65)||(30568561-30568609)
chr8 (17-65)||(30650243-30650291)
chr8 (32-64)||(32733765-32733797)
chr8 (17-65)||(37393762-37393810)
chr8 (13-65)||(39911970-39912022)
chr8 (17-65)||(39912204-39912252)


Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 323
Target Start/End: Original strand, 2949576 - 2949884
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaaga-accaaaaatacaatttaacctatattttaaaaatgtgtgtatttatatc 115  Q
    |||||| ||||| | ||||  |||| |||||||||||||||||||||||  ||||||||| |||||||  ||||||||||||||||||| ||||||||||    
T  2949576 tgtaacagagagaagttaagagaccaaaataaatcaaattttaattaagggaccaaaaatgcaatttagtctatattttaaaaatgtgtatatttatatc 2949675  T
Q  116 acgtatttacaccaaaactatagtaatgaacattgtcatatattgtagtaaatggagttgatctctcttggtttgaattagcttgttaggtatatatcat 215  Q
    ||||||||| |||||||| |||||||||||||||||||| |||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  2949676 acgtatttataccaaaacaatagtaatgaacattgtcatttattatagtaaatggagatgatctctcgtggtttgaattagcttgttaggtatatatcat 2949775  T
Q  216 aaatttttctcataaacgatagcattaatccattaagcca-cttaggctacattaagccaccaccttgctctctatgattccattgaaacatggtacaaa 314  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2949776 aaatttttctcataaacgatagcattaatccattaagccaccttaggctacattaagccaccaccttgctctctatgattccattgaaacatggtacaaa 2949875  T
Q  315 aacacttcc 323  Q
    |||||||||    
T  2949876 aacacttcc 2949884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 184 - 255
Target Start/End: Original strand, 2981380 - 2981451
Alignment:
Q  184 tggtttgaattagcttgttaggtatatatcataaatttttctcataaacgatagcattaatccattaagcca 255  Q
    |||| |||||| | || |||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  2981380 tggtgtgaatttgttttttaggtatatatcataaatttttctcataaacaatagcattaatccatttagcca 2981451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 266 - 301
Target Start/End: Original strand, 2981666 - 2981701
Alignment:
Q  266 attaagccaccaccttgctctctatgattccattga 301  Q
    ||||||||||||||||||||||||||||||||||||    
T  2981666 attaagccaccaccttgctctctatgattccattga 2981701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 3289195 - 3289243
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||||| | |||| ||||| |||||||||||||||||||||||    
T  3289195 tgtaacggagagaagttaagggaccaaaataaatcaaattttaattaag 3289243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 35119096 - 35119144
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||||| |||||| ||||| ||||||||| |||||||||||||    
T  35119096 tgtaacggagagaaattaatggaccaaaataaatcgaattttaattaag 35119144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 88 - 143
Target Start/End: Complemental strand, 21917443 - 21917388
Alignment:
Q  88 atattttaaaaatgtgtgtatttatatcacgtatttacaccaaaactatagtaatg 143  Q
    ||||| || |||| ||||||||||||||| ||||||||  ||||||||||||||||    
T  21917443 atattctagaaatatgtgtatttatatcatgtatttactacaaaactatagtaatg 21917388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 6220341 - 6220386
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaatt 62  Q
    |||||||||||| | |||| ||||| ||||||||||||||||||||    
T  6220341 tgtaacggagagaagttaagggaccaaaataaatcaaattttaatt 6220386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 172
Target Start/End: Original strand, 19238687 - 19238736
Alignment:
Q  123 tacaccaaaactatagtaatgaacattgtcatatattgtagtaaatggag 172  Q
    ||||||||||||||||||||||| ||| |||| |||||||| ||| ||||    
T  19238687 tacaccaaaactatagtaatgaatattatcatttattgtaggaaaaggag 19238736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 33346579 - 33346531
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||||| | |||| ||||| ||||||||| |||||||||||||    
T  33346579 tgtaacggagagaagttaagggaccaaaataaatcgaattttaattaag 33346531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 33972491 - 33972563
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaa-gaaccaaaaatacaatttaaccta 88  Q
    |||||||||||| | |||| ||||| ||||||||  |||||||||||| | ||||||||| ||||||| ||||    
T  33972491 tgtaacggagagaagttaagggaccaaaataaattgaattttaattaagggaccaaaaatgcaatttagccta 33972563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 42607787 - 42607836
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaaga 66  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  42607787 tgtaacagagagtaattaaaggaccgaaataaatcaaattttaattaaga 42607836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 6181721 - 6181669
Alignment:
Q  13 aatatgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    ||||||||| |||||| | |||||||||| ||||||||| |||||||||||||    
T  6181721 aatatgtaatggagagaagttaaaggaccaaaataaatcgaattttaattaag 6181669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 11394945 - 11394993
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||||| | |||| ||||| |||||||||||||||||||||||    
T  11394945 tgtaacggagagaagttaagggaccaaaataaatcaaattttaattaag 11394993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 16267816 - 16267768
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||||| | |||| ||||| |||||||||||||||||||||||    
T  16267816 tgtaacggagagaagttaagggaccaaaataaatcaaattttaattaag 16267768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 13831307 - 13831355
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||||| | |||| ||||| ||||||||| |||||||||||||    
T  13831307 tgtaacggagagaagttaagggaccaaaataaatcgaattttaattaag 13831355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 16267975 - 16268022
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||||| | |||| ||||| |||||||||||||||||||||||    
T  16267975 tgtaacggagagaagttaa-ggaccaaaataaatcaaattttaattaag 16268022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 20260529 - 20260481
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||||| | |||||  ||| |||||||||||||||||||||||    
T  20260529 tgtaacggagagaagttaaaataccaaaataaatcaaattttaattaag 20260481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 64
Target Start/End: Complemental strand, 25995870 - 25995838
Alignment:
Q  32 ttaaaggaccgaaataaatcaaattttaattaa 64  Q
    |||||||||||||||||||||| ||||||||||    
T  25995870 ttaaaggaccgaaataaatcaatttttaattaa 25995838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 168
Target Start/End: Original strand, 27580735 - 27580815
Alignment:
Q  88 atattttaaaaatgtgtgtatttatatcacgtatttacaccaaaactatagtaatgaacattgtcatatattgtagtaaat 168  Q
    ||||| ||||||| ||||||||||||| | |||||||   ||||| |||||||||  |||||||||| |||| ||| ||||    
T  27580735 atattctaaaaatatgtgtatttatattatgtatttattacaaaattatagtaatagacattgtcatttattttagaaaat 27580815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 33753501 - 33753549
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||||| | |||| ||||| ||||||||| |||||||||||||    
T  33753501 tgtaacggagagaagttaagggaccaaaataaatcgaattttaattaag 33753549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 50574802 - 50574850
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||| ||||| | |||| ||||| |||||||||||||||||||||||    
T  50574802 tgtaacagagagaagttaagggaccaaaataaatcaaattttaattaag 50574850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 52412883 - 52412931
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||| ||||| | |||| ||||| |||||||||||||||||||||||    
T  52412883 tgtaacagagagaagttaagggaccaaaataaatcaaattttaattaag 52412931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 172
Target Start/End: Original strand, 49013030 - 49013114
Alignment:
Q  88 atattttaaaaatgtgtgtatttatatcacgtatttacaccaaaactatagtaatgaacattgtcatatattgtagtaaatggag 172  Q
    ||||| ||||||||||||||||||||||| ||||||||  || ||||||||||| | ||||||| || |||||||| ||||||||    
T  49013030 atattataaaaatgtgtgtatttatatcatgtatttactacataactatagtaacggacattgttatttattgtaggaaatggag 49013114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 31715906 - 31715954
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||||| | ||| |||||| |||||||||||||||||||||||    
T  31715906 tgtaacggagagaagttataggaccaaaataaatcaaattttaattaag 31715954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 47250827 - 47250878
Alignment:
Q  13 aatatgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaa 64  Q
    |||||||||||||||| | |||| ||||| ||||||||| ||||||||||||    
T  47250827 aatatgtaacggagagaagttaagggaccaaaataaatcgaattttaattaa 47250878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 44447999 - 44447958
Alignment:
Q  32 ttaaaggaccgaaataaatcaaattttaattaagaaccaaaa 73  Q
    |||| ||||| ||||||||||||||||||||||| |||||||    
T  44447999 ttaagggaccaaaataaatcaaattttaattaaggaccaaaa 44447958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 23437257 - 23437205
Alignment:
Q  13 aatatgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||| |||||   |||||||||| ||||||||| |||||||||||||    
T  23437257 aatatgtaaccgagagaggttaaaggaccaaaataaatcgaattttaattaag 23437205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 43140803 - 43140751
Alignment:
Q  13 aatatgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||| ||||| | ||||  |||| |||||||||||||||||||||||    
T  43140803 aatatgtaacagagaggagttaagagaccaaaataaatcaaattttaattaag 43140751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 87 - 168
Target Start/End: Original strand, 8019951 - 8020032
Alignment:
Q  87 tatattttaaaaatgtgtgtatttatatcacgtatttacaccaaaactatagtaatgaacattgtcatatattgtagtaaat 168  Q
    |||||| || |||| |||| |||||||||| ||||||||| ||||||||||||||||||||||| ||| |||| ||| ||||    
T  8019951 tatattctagaaatatgtgcatttatatcatgtatttacatcaaaactatagtaatgaacattgccatttattttagaaaat 8020032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 107 - 168
Target Start/End: Complemental strand, 11777907 - 11777846
Alignment:
Q  107 atttatatcacgtatttacaccaaaactatagtaatgaacattgtcatatattgtagtaaat 168  Q
    |||||||| | |||||||| ||||||||||||||| | |||||||||| ||||||| |||||    
T  11777907 atttatattatgtatttacgccaaaactatagtaaaggacattgtcatttattgtaataaat 11777846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 9010786 - 9010838
Alignment:
Q  13 aatatgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||||||||| | |||| ||||| ||||||||| |||||||||||||    
T  9010786 aatatgtaacggagagaagttaagggaccaaaataaatcgaattttaattaag 9010838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 45911680 - 45911632
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||||| | |||| ||||| |||||||||||||||||||||||    
T  45911680 tgtaacggagagaagttaagggaccaaaataaatcaaattttaattaag 45911632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 46621028 - 46620980
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||||| | |||||||||| ||||||||| |||||||||||||    
T  46621028 tgtaacggagagaagttaaaggaccaaaataaatcgaattttaattaag 46620980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 107 - 150
Target Start/End: Original strand, 8019530 - 8019573
Alignment:
Q  107 atttatatcacgtatttacaccaaaactatagtaatgaacattg 150  Q
    ||||| |||| ||||||||| |||||||||||||||||||||||    
T  8019530 atttacatcatgtatttacatcaaaactatagtaatgaacattg 8019573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 21885111 - 21885157
Alignment:
Q  19 taacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    ||||||| || |||||| ||||| |||||||||||||||||||||||    
T  21885111 taacggatagaaattaagggaccaaaataaatcaaattttaattaag 21885157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 65
Target Start/End: Original strand, 28570721 - 28570754
Alignment:
Q  32 ttaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||| |||||||||||||||||||||||    
T  28570721 ttaaaggaccaaaataaatcaaattttaattaag 28570754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 65
Target Start/End: Original strand, 43317179 - 43317212
Alignment:
Q  32 ttaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||| |||||||||||||||||||||||    
T  43317179 ttaaaggaccaaaataaatcaaattttaattaag 43317212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 149
Target Start/End: Original strand, 7593137 - 7593189
Alignment:
Q  97 aaatgtgtgtatttatatcacgtatttacaccaaaactatagtaatgaacatt 149  Q
    ||||||||| ||||||||||  |||||||  ||||||||||||||| ||||||    
T  7593137 aaatgtgtgcatttatatcatatatttacttcaaaactatagtaattaacatt 7593189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 27347882 - 27347930
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||||| | |||| ||||| ||||||||| |||||||||||||    
T  27347882 tgtaacggagagaagttaagggaccaaaataaatcgaattttaattaag 27347930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 33882234 - 33882282
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||||  | |||| ||||| |||||||||||||||||||||||    
T  33882234 tgtaacggagaaaagttaagggaccaaaataaatcaaattttaattaag 33882282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 45683402 - 45683450
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||||  | |||||||||| ||||||||||||||||| |||||    
T  45683402 tgtaacggagataagttaaaggaccaaaataaatcaaattttagttaag 45683450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 48210049 - 48210001
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    ||||| |||||| | |||||||| | |||||||||||||||||||||||    
T  48210049 tgtaagggagagaagttaaaggatcaaaataaatcaaattttaattaag 48210001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 53645552 - 53645504
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||||| | |||||||||| ||||||| | |||||||||||||    
T  53645552 tgtaacggagagaagttaaaggaccaaaataaaccgaattttaattaag 53645504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 54136192 - 54136144
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||| ||||| |||||||||| | ||||||||| |||||||||||||    
T  54136192 tgtaacagagagaaattaaaggatcaaaataaatcgaattttaattaag 54136144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 54191689 - 54191641
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||||| | |||| ||||| ||||||||| |||||||||||||    
T  54191689 tgtaacggagagaagttaagggaccaaaataaatcgaattttaattaag 54191641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 40453 - 40405
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  40453 tgtaacgtagagtaattaagggaccgaaataaatcaaattttaattaag 40405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 88 - 172
Target Start/End: Original strand, 3960840 - 3960924
Alignment:
Q  88 atattttaaaaatgtgtgtatttatatcacgtatttacaccaaaactatagtaatgaacattgtcatatattgtagtaaatggag 172  Q
    ||||| || ||||||||| |||||||||| ||||||||  |||||||||||||||| ||||| |||| ||| |||| ||||||||    
T  3960840 atattatagaaatgtgtgcatttatatcatgtatttaccacaaaactatagtaatggacattatcatttatcgtagaaaatggag 3960924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 87 - 169
Target Start/End: Complemental strand, 22311765 - 22311683
Alignment:
Q  87 tatattttaaaaatgtgtgtatttatatcacgtatttacaccaaaactatagtaatgaacattgtcatatattgtagtaaatg 169  Q
    |||||| ||||||| |||| ||||||||||  ||||||||| ||||||||||||||| ||||||  || |||||||| |||||    
T  22311765 tatattctaaaaatatgtgcatttatatcatttatttacacgaaaactatagtaatggacattgcaatttattgtagcaaatg 22311683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 90 - 172
Target Start/End: Complemental strand, 26674194 - 26674112
Alignment:
Q  90 attttaaaaatgtgtgtatttatatcacgtatttacaccaaaactatagtaatgaacattgtcatatattgtagtaaatggag 172  Q
    |||||| |||| ||||||||||||||| |||||||| ||||||| ||||||||| ||| | |||| |||| ||| ||||||||    
T  26674194 attttagaaatatgtgtatttatatcatgtatttactccaaaacgatagtaatggacactatcatttattttaggaaatggag 26674112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 4120869 - 4120817
Alignment:
Q  13 aatatgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||||||||| |||||||||||| ||||||||| |||||| ||||||    
T  4120869 aatatgtaacggagagaaattaaaggaccaaaataaatcgaattttgattaag 4120817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 43183868 - 43183916
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||||| | |||| ||||| |||||||||||||||||||||||    
T  43183868 tgtaacggagagaagttaagggaccaaaataaatcaaattttaattaag 43183916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 33819677 - 33819727
Alignment:
Q  13 aatatgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaa 64  Q
    |||||||||||||||| | |||| ||||| ||||||||||||||||||||||    
T  33819677 aatatgtaacggagagaagttaa-ggaccaaaataaatcaaattttaattaa 33819727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 40694460 - 40694507
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaa 64  Q
    |||||||||||| |||||| ||||| ||||||||| ||||||||||||    
T  40694460 tgtaacggagagaaattaagggaccaaaataaatctaattttaattaa 40694507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 65
Target Start/End: Original strand, 15137104 - 15137137
Alignment:
Q  32 ttaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||| |||||||||||||||||||||||    
T  15137104 ttaaaggaccaaaataaatcaaattttaattaag 15137137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 65
Target Start/End: Complemental strand, 36211436 - 36211403
Alignment:
Q  32 ttaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||| |||||||||||||||||||||||    
T  36211436 ttaaaggaccaaaataaatcaaattttaattaag 36211403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 13354282 - 13354230
Alignment:
Q  13 aatatgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    ||||||||| |||||| | |||| ||||| ||||||||| |||||||||||||    
T  13354282 aatatgtaatggagagaagttaagggaccaaaataaatcgaattttaattaag 13354230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 16736383 - 16736431
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||| ||||| | |||| ||||||||||||||| |||||||||||||    
T  16736383 tgtaacagagagaagttaagggaccgaaataaatcgaattttaattaag 16736431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 18565167 - 18565119
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||||| | |||| ||||| ||||||||| |||||||||||||    
T  18565167 tgtaacggagagaagttaagggaccaaaataaatcgaattttaattaag 18565119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 25642553 - 25642601
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    ||||||||| || | |||| ||||| |||||||||||||||||||||||    
T  25642553 tgtaacggaaagaagttaagggaccaaaataaatcaaattttaattaag 25642601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 27132612 - 27132564
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    ||||||| |||| | |||| ||||| |||||||||||||||||||||||    
T  27132612 tgtaacgaagagaagttaagggaccaaaataaatcaaattttaattaag 27132564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 27476648 - 27476700
Alignment:
Q  13 aatatgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||| ||||| | |||| ||||| ||||||||| |||||||||||||    
T  27476648 aatatgtaacagagagaagttaagggaccaaaataaatcgaattttaattaag 27476700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 28203145 - 28203193
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||| ||||| | |||||||||| ||||||||| |||||||||||||    
T  28203145 tgtaacagagagaagttaaaggaccaaaataaatcgaattttaattaag 28203193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 34820380 - 34820332
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||| ||||| | |||||||||| ||||||||| |||||||||||||    
T  34820380 tgtaacagagagaagttaaaggaccaaaataaatctaattttaattaag 34820332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 34820564 - 34820612
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||||| | |||| ||||| ||||||||||||||||| |||||    
T  34820564 tgtaacggagagaagttaagggaccaaaataaatcaaattttagttaag 34820612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 36211626 - 36211674
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||||| | |||| ||||| ||||||||||||||||| |||||    
T  36211626 tgtaacggagagaagttaagggaccaaaataaatcaaattttagttaag 36211674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 40589333 - 40589387
Alignment:
Q  11 agaatatgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||||||||||| | |||||||||| ||||||||| |||||||||||||    
T  40589333 agaatatgtaacggagagaagttaaaggaccaaaataaatcgaattttaattaag 40589387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 40589936 - 40589990
Alignment:
Q  11 agaatatgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||||||||||| | |||||||||| ||||||||| |||||||||||||    
T  40589936 agaatatgtaacggagagaagttaaaggaccaaaataaatcgaattttaattaag 40589990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 33763193 - 33763241
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||||| | |||| ||||||||||||||| |||||||||||||    
T  33763193 tgtaacggagagaagttaagggaccgaaataaatcgaattttaattaag 33763241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 5624478 - 5624432
Alignment:
Q  19 taacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||| | |||| ||||| |||||||||||||||||||||||    
T  5624478 taacggagagaagttaagggaccaaaataaatcaaattttaattaag 5624432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 65
Target Start/End: Complemental strand, 26289106 - 26289073
Alignment:
Q  32 ttaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||| |||||||||||||||||||||||    
T  26289106 ttaaaggaccaaaataaatcaaattttaattaag 26289073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 34821992 - 34821943
Alignment:
Q  123 tacaccaaaactatagtaatgaacattgtcatatattgtagtaaatggag 172  Q
    ||||||||||||||| ||||||| |||||||| |||| ||| ||||||||    
T  34821992 tacaccaaaactatactaatgaaaattgtcatttattttagaaaatggag 34821943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 334397 - 334349
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    ||||| |||||| | |||| ||||| |||||||||||||||||||||||    
T  334397 tgtaaaggagagaagttaagggaccaaaataaatcaaattttaattaag 334349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 7399178 - 7399130
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||||| | |||| ||||| ||||||||| |||||||||||||    
T  7399178 tgtaacggagagaagttaagggaccaaaataaatcgaattttaattaag 7399130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 7399363 - 7399411
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||| ||||| | |||| ||||| |||||||||||||||||||||||    
T  7399363 tgtaacagagagaagttaagggaccaaaataaatcaaattttaattaag 7399411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 15267525 - 15267573
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||||| | |||||||||| ||||||||| ||||||| |||||    
T  15267525 tgtaacggagagaagttaaaggaccaaaataaatcgaattttagttaag 15267573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 25923400 - 25923452
Alignment:
Q  13 aatatgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||||||||| ||||||  |||| ||||||||  |||||||||||||    
T  25923400 aatatgtaacggagagaaattaagagaccaaaataaattgaattttaattaag 25923452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 39706336 - 39706384
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||||| | |||| ||||| ||||||||| |||||||||||||    
T  39706336 tgtaacggagagaagttaagggaccaaaataaatcgaattttaattaag 39706384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 35580234 - 35580282
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||||| | |||||||||| |||||||||||||||||||||||    
T  35580234 tgtaacggagagaagttaaaggaccaaaataaatcaaattttaattaag 35580282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 52606229 - 52606181
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||||| | |||| ||||| |||||||||||||||||||||||    
T  52606229 tgtaacggagagaagttaagggaccaaaataaatcaaattttaattaag 52606181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 52609643 - 52609695
Alignment:
Q  13 aatatgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||| ||||| |||||| ||||| ||||||||| |||||||||||||    
T  52609643 aatatgtaacagagagaaattaagggaccaaaataaatcgaattttaattaag 52609695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 54107770 - 54107722
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||||| | |||||||||| ||||||||| |||||||||||||    
T  54107770 tgtaacggagagaagttaaaggaccaaaataaatcgaattttaattaag 54107722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 2829689 - 2829740
Alignment:
Q  13 aatatgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaa 64  Q
    |||||||||||||||  | |||| ||||| ||||||||||||||||||||||    
T  2829689 aatatgtaacggagaaaagttaagggaccaaaataaatcaaattttaattaa 2829740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 21169765 - 21169719
Alignment:
Q  19 taacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||| | |||| ||||| |||||||||||||||||||||||    
T  21169765 taacggagagaagttaagggaccaaaataaatcaaattttaattaag 21169719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 43899355 - 43899405
Alignment:
Q  13 aatatgtaacggagagtaattaaaggaccgaaataaatcaaattttaatta 63  Q
    |||||||||||||||| | |||| ||||| ||||||||| |||||||||||    
T  43899355 aatatgtaacggagagaagttaagggaccaaaataaatcgaattttaatta 43899405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 53841311 - 53841357
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaatta 63  Q
    |||||||||||| |||||| ||||| ||||||||| |||||||||||    
T  53841311 tgtaacggagagaaattaagggaccaaaataaatcgaattttaatta 53841357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 40926112 - 40926063
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaaga 66  Q
    |||||||||||| | |||| ||| | ||||||||||||||||||||||||    
T  40926112 tgtaacggagagaagttaatggatcaaaataaatcaaattttaattaaga 40926063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 41208499 - 41208454
Alignment:
Q  20 aacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    ||||||||| | |||| ||||| |||||||||||||||||||||||    
T  41208499 aacggagagaagttaagggaccaaaataaatcaaattttaattaag 41208454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 53310007 - 53310056
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaaga 66  Q
    ||||| |||||| | |||| ||||| ||||||||||||||||||||||||    
T  53310007 tgtaatggagagaagttaagggaccaaaataaatcaaattttaattaaga 53310056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 12123364 - 12123412
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    ||||||||| || | |||| ||||| |||||||||||||||||||||||    
T  12123364 tgtaacggaaagaagttaagggaccaaaataaatcaaattttaattaag 12123412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 17273882 - 17273830
Alignment:
Q  13 aatatgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    ||||||||| | |||| | |||||||||| ||||||||| |||||||||||||    
T  17273882 aatatgtaatgaagagaagttaaaggaccaaaataaatcgaattttaattaag 17273830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 22444467 - 22444519
Alignment:
Q  13 aatatgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||| ||||| | |||| | ||||||||||||| |||||||||||||    
T  22444467 aatatgtaacagagagaagttaaggaaccgaaataaatcgaattttaattaag 22444519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 27254085 - 27254037
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||||| | |||| | ||| |||||||||||||||||||||||    
T  27254085 tgtaacggagagaagttaaggaaccaaaataaatcaaattttaattaag 27254037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 28688091 - 28688043
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||| ||||||| | |||| ||||| |||||||||||||||||||||||    
T  28688091 tgtaccggagagaagttaagggaccaaaataaatcaaattttaattaag 28688043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 64
Target Start/End: Complemental strand, 31513949 - 31513917
Alignment:
Q  32 ttaaaggaccgaaataaatcaaattttaattaa 64  Q
    |||||||||| ||||||||||||||||||||||    
T  31513949 ttaaaggaccaaaataaatcaaattttaattaa 31513917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 33812825 - 33812769
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaatt-aagaaccaaa 72  Q
    ||||||||| || | |||||||| | |||||||||||||||||||| ||||||||||    
T  33812825 tgtaacggatagaagttaaaggatcaaaataaatcaaattttaattaaagaaccaaa 33812769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 34630083 - 34630035
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||||| | |||| ||||| ||||||||| |||||||||||||    
T  34630083 tgtaacggagagaagttaatggaccaaaataaatcgaattttaattaag 34630035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 159
Target Start/End: Complemental strand, 33863 - 33791
Alignment:
Q  87 tatattttaaaaatgtgtgtatttatatcacgtatttacaccaaaactatagtaatgaacattgtcatatatt 159  Q
    |||||| || |||| |||| |||||||| | ||||||| |||||||||||||||||| |||||| ||| ||||    
T  33863 tatattctagaaatatgtgcatttatattatgtatttataccaaaactatagtaatggacattgccatttatt 33791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 31230714 - 31230666
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||||| | |||| ||||| |||||||||||||||||||||||    
T  31230714 tgtaacggagagaagttaagggaccaaaataaatcaaattttaattaag 31230666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 11198490 - 11198538
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||||| | |||| ||| | |||||||||||||||||||||||    
T  11198490 tgtaacggagagaagttaagggatcaaaataaatcaaattttaattaag 11198538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 14920696 - 14920744
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||| ||||| | |||| ||||| |||||||||||||||||||||||    
T  14920696 tgtaacagagagaagttaagggaccaaaataaatcaaattttaattaag 14920744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 23244616 - 23244560
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaatt-aagaaccaaa 72  Q
    |||||| ||||| | |||| ||||| |||||||||||||||||||| ||||||||||    
T  23244616 tgtaacagagagaagttaagggaccaaaataaatcaaattttaattaaagaaccaaa 23244560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 24456937 - 24456985
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||||| | |||| ||||| ||||||||| |||||||||||||    
T  24456937 tgtaacggagagaagttaagggaccaaaataaatcgaattttaattaag 24456985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 29027253 - 29027301
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||||| | |||| ||||| ||||||||| |||||||||||||    
T  29027253 tgtaacggagagaagttaagggaccaaaataaatcgaattttaattaag 29027301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 30568561 - 30568609
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||||  |||||| ||||| |||||||||||||||||| ||||    
T  30568561 tgtaacggagaaaaattaagggaccaaaataaatcaaattttaaataag 30568609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 30650291 - 30650243
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||||| | |||| | ||| |||||||||||||||||||||||    
T  30650291 tgtaacggagagaagttaaggaaccaaaataaatcaaattttaattaag 30650243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 64
Target Start/End: Complemental strand, 32733797 - 32733765
Alignment:
Q  32 ttaaaggaccgaaataaatcaaattttaattaa 64  Q
    |||||||||| ||||||||||||||||||||||    
T  32733797 ttaaaggaccaaaataaatcaaattttaattaa 32733765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 37393762 - 37393810
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    |||||||||||| | |||| ||||| ||||||||| |||||||||||||    
T  37393762 tgtaacggagagaagttaagggaccaaaataaatcgaattttaattaag 37393810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 39912022 - 39911970
Alignment:
Q  13 aatatgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    ||||| |||||||||| | |||||||||| ||||||| | |||||||||||||    
T  39912022 aatatataacggagagaagttaaaggaccaaaataaaccgaattttaattaag 39911970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 39912204 - 39912252
Alignment:
Q  17 tgtaacggagagtaattaaaggaccgaaataaatcaaattttaattaag 65  Q
    ||||| |||||| | |||| ||||| |||||||||||||||||||||||    
T  39912204 tgtaatggagagaagttaagggaccaaaataaatcaaattttaattaag 39912252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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