View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2014_low_5 (Length: 666)

Name: NF2014_low_5
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2014_low_5
NF2014_low_5
[»] chr2 (1 HSPs)
chr2 (17-658)||(8930040-8930673)


Alignment Details
Target: chr2 (Bit Score: 544; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 17 - 658
Target Start/End: Complemental strand, 8930673 - 8930040
Alignment:
Q  17 ccaatttgctatatagggtgatgccctttgacccaaaaagtgatcaatatttattcgataatgcaaatatggctgtagcttttggtattacgtagattca 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |     
T  8930673 ccaatttgctatatagggtgatgccctttgacccaaaaagtgatcaatatttattcgataatgcaaatatggctgtagcttttggtatt---------cg 8930583  T
Q  117 tcaaaattacgatgagccacaacgtgtatcttttgtaaacttatggtagctcaccgtaatttcaacaaacccacgatgcattcagatttgtcgtattaat 216  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8930582 tcaaaattacgatgagccacaacgtgtatcttttgtaaaaatatggtagctcaccgtaatttcaacaaacccacgatgcattcagatttgtcgtattaat 8930483  T
Q  217 taaaaccacaatttcataaataaacaaaaaatgcaatttctgtattgttcttgagtnnnnnnnnntcgattatggtttccggactctgcatatgcaaaaa 316  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||         |||| |||||||||||||||||||||| |||||||    
T  8930482 taaaaccacaatttcataaataaacaaaaaacgcaatttctgtattgttcttgagtaaaaaaaaatcgagtatggtttccggactctgcatacgcaaaaa 8930383  T
Q  317 ctttaatgtatcggactgttcatgtgtaatgagtctggaggctgagaatgcacatgaatcttatacaacacaaacttgtttcagtttaacaccactagat 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8930382 ctttaatgtatcggactgttcatgtgtaatgagtctggaggctgagaatgcacatgaatcttatacaacacaaacttgtttcagtttaacaccaatagat 8930283  T
Q  417 tatgtaacatgatgaaaatttgttttgttgttttacattagccattcattattcgacacagattggtgaagttgtatttgtggtcctaatcaagaatatt 516  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8930282 tttgtaacatgatgaaaatttgttttgttgttttacattagccattcattattcgacacagattggtgaagttgtatttgtggtcctaatcaagaatatt 8930183  T
Q  517 atgac-aaagttgaaattctccatacaaattttataaatcagagtgaatattaatactattatctaatatacttagtttagttacaaaccttaaaccgcc 615  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8930182 atgactaaagttgaaattctccatacaaattttataaatcagagtgaatattaatactattatctaatatacttagtttagttacaaaccttaaaccgcc 8930083  T
Q  616 ctactttttctgcttctttctaattatttaatttccctatgct 658  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  8930082 ctactttttctgcttctttctaattatttaatttccctatgct 8930040  T

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