View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_low_52 (Length: 331)
Name: NF2014_low_52
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_low_52 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 16 - 313
Target Start/End: Complemental strand, 53982665 - 53982368
Alignment:
| Q |
16 |
ctattgatgaagaaggcagtgaaactgcgaaggccgtttgcttgcttgagagaaggcctctactcagttagtgaagcaatttatcttttgttaatacttg |
115 |
Q |
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| T |
53982665 |
ctattgatgaagaaggcagtgaaactgcggaggccgtttgcttgcttgagagaaggcctctactcagttagtgaaggaatttatcttttgttaatacttg |
53982566 |
T |
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| Q |
116 |
tttgactttatttatatacttgttttgtatagtgaaaatctaatcctgacattgaatagaaatggttcctaataaaaacttataaaaagcttggacactc |
215 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
53982565 |
tttgactttatttatatacttgctttgtatagtgaaaatctaatcctgacattgaatagaaatggttcctactaaaaacttataaaaagcttggacactc |
53982466 |
T |
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| Q |
216 |
catagtcccaaaacctaagttgggataagtggctgccctaccacgcctctgtagtgtgattccatggttgtgcctagccgtcatgctcgcgcctcctt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53982465 |
catagtcccaaaacctaagttgggataagtggctgccctaccacgcctctgtagtgtgattccatggttgtgcctagccgtcatgctcgcgcctcctt |
53982368 |
T |
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