View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_low_53 (Length: 329)
Name: NF2014_low_53
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_low_53 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 17 - 314
Target Start/End: Complemental strand, 9629699 - 9629402
Alignment:
| Q |
17 |
atgtatttggtgaaaaaatcaatgtatggtccaatattgtttatttaattcatagcagctaatgattgagtatgcatgtatcatgtgtgttaatgttatt |
116 |
Q |
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| T |
9629699 |
atgtatttggtgaaaaaatgaatgtatggtccaatattgtttatttaattcatagcagctaatgattgagtatgcatgtatcatgtgtgttaatgttatt |
9629600 |
T |
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| Q |
117 |
tatgttttcaatttcggtccattaataattaattatattttcttaaaatttctcttatgtagattggaattgaatgccaactcagtgctgaagaacttgc |
216 |
Q |
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| T |
9629599 |
tatgttttcaattttggtccattaataattaattatattttcttaaaatttctcttatgtagattggaattgaatgccaactcagtgctgaagaacttgc |
9629500 |
T |
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| Q |
217 |
tcaacaaatccagcaaacattttattaagataggttattaccatctagagacaagatcaagaatcagtgaatatctcttttctttttatgtctcacag |
314 |
Q |
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| T |
9629499 |
tcaacaaatccagcaaacattttattaagaaaggttattaccatctagagacaagatcaagaatcaatgaatatctcttttctttttatgtctcacag |
9629402 |
T |
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Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 171 - 237
Target Start/End: Original strand, 41258571 - 41258637
Alignment:
| Q |
171 |
ttatgtagattggaattgaatgccaactcagtgctgaagaacttgctcaacaaatccagcaaacatt |
237 |
Q |
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|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41258571 |
ttatatagattggaattgaatgccaactgagtgctgaagaacttgctcaacaaatccagcaaacatt |
41258637 |
T |
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