View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_low_54 (Length: 324)
Name: NF2014_low_54
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_low_54 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 13 - 304
Target Start/End: Complemental strand, 45925005 - 45924714
Alignment:
| Q |
13 |
gagagcatgatactattctaaatttctcatcatccatggcagaacaacctaccctcaccaacctcccacccacagtggtgagactttttcatgttagagt |
112 |
Q |
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| T |
45925005 |
gagagcatgatactattctaaatttctcatcatccatggcagaacaacctaccctcaccaacctcccacccacagtggtgagattttttcatgttagagt |
45924906 |
T |
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| Q |
113 |
ttaatcaaacttctcaaattaatcaaactttatgcagtataccaatttatacttattgaagattgataatagtagaagaggaagtgctttaattatcaag |
212 |
Q |
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| T |
45924905 |
ttaatcaaacttctcaaattaatcaaactttatgcagtataccaatttatacttattgaagattgataatagtagaagaggaagtgctttaattatcaag |
45924806 |
T |
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| Q |
213 |
cttaccacaccaaccaaatcaagagtccaagatgtatatctcttagtcaataaacaataataataattacatatataaaattacaaattctc |
304 |
Q |
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| T |
45924805 |
cttaccacaccaaccaaatcacgagtccaagatgtatatctcttagtcaataaacaataataataattacatatataaaattacaaattctc |
45924714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 99 - 304
Target Start/End: Complemental strand, 45936878 - 45936669
Alignment:
| Q |
99 |
tttcatgttagagtttaatcaaacttctcaaattaat---caaacttt-atgcagtataccaatttatacttattgaagattgataatagtagaagagga |
194 |
Q |
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| T |
45936878 |
tttcatgttagagtttaatcaaacttctcaaattaataatcaaacttttatgcagtataccaatttacacttattgaagattgataatagtagaagagga |
45936779 |
T |
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| Q |
195 |
agtgctttaattatcaagcttaccacaccaaccaaatcaagagtccaagatgtatatctcttagtcaataaacaataataataattacatatataaaatt |
294 |
Q |
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| T |
45936778 |
cgaactttaattatcaagcttaccacaccaaccaaatcaagagtccaagatgtatatctcttagtcaataaacaataataataattacatatataaaatt |
45936679 |
T |
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| Q |
295 |
acaaattctc |
304 |
Q |
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|||||||||| |
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| T |
45936678 |
acaaattctc |
45936669 |
T |
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