View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2014_low_55 (Length: 323)

Name: NF2014_low_55
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2014_low_55
NF2014_low_55
[»] chr3 (12 HSPs)
chr3 (9-304)||(2758856-2759151)
chr3 (10-305)||(2838803-2839095)
chr3 (10-292)||(2856023-2856305)
chr3 (10-306)||(2768712-2769008)
chr3 (9-274)||(5412549-5412814)
chr3 (10-298)||(2748641-2748929)
chr3 (9-290)||(2818199-2818480)
chr3 (9-273)||(2797003-2797267)
chr3 (9-305)||(2790000-2790305)
chr3 (9-292)||(2806903-2807195)
chr3 (22-105)||(2755699-2755782)
chr3 (21-95)||(3304343-3304417)
[»] scaffold0691 (1 HSPs)
scaffold0691 (9-280)||(6377-6648)


Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 9 - 304
Target Start/End: Original strand, 2758856 - 2759151
Alignment:
Q  9 agatgaagcagaaaccaatgaaggaataagaacatgggtgaagcatatgagagaagcatcatttcgcattgaagatataattgacgaataccttcggctg 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2758856 agatgaagcagaaaccaatgaaggaataagaacatgggtgaagcatatgagagaagcatcgtttcgcattgaagatataattgacgaataccttcggctg 2758955  T
Q  109 atccatacggccaatcctcctggtagcggatctgtattcaacaagattacaagcccaatcaaaactttgattccccgtcacaaaattgcatcagagattc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2758956 atccatacggccaatcctcctggtagcggatctgtattcaacaagattacaagcccaatcaaaactttgattccccgtcacaaaattgcatcagagattc 2759055  T
Q  209 aagacatcaagctgacaattcacggaatcaaggaaagaagcgtgaggtataactttcaaatttcaaatgaacaaggatcctcaaacagcagcaaca 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2759056 aagacatcaagctgacaattcacggaatcaaggaaagaagcgtgaggtataactttcaaatttcaaatgaacaaggatcctcaaacagcagcaaca 2759151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 10 - 305
Target Start/End: Complemental strand, 2839095 - 2838803
Alignment:
Q  10 gatgaagcagaaaccaatgaaggaataagaacatgggtgaagcatatgagagaagcatcatttcgcattgaagatataattgacgaataccttcggctga 109  Q
    ||||||||||| | ||| || ||||||||||| |||||||||||  ||||||||||||||||||||||||||||| | ||||| ||||||||||| || |    
T  2839095 gatgaagcagacatcaacgatggaataagaacttgggtgaagcagctgagagaagcatcatttcgcattgaagatgtcattgatgaataccttcgactaa 2838996  T
Q  110 tccatacggccaatcctcctggtagcggatctgtattcaacaagattacaagcccaatcaaaactttgattccccgtcacaaaattgcatcagagattca 209  Q
    | |||| |||||||||||||||  || ||||| ||| ||    || | ||||   |||||||||||||||||||||||||||||||||||||||||||||    
T  2838995 tgcatagggccaatcctcctggatgcagatctttatgcat---gactccaaggttaatcaaaactttgattccccgtcacaaaattgcatcagagattca 2838899  T
Q  210 agacatcaagctgacaattcacggaatcaaggaaagaagcgtgaggtataactttcaaatttcaaatgaacaaggatcctcaaacagcagcaacag 305  Q
    ||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2838898 agacatcaagctgacaactcacggaatcaagaaaagaagcgagaggtataactttcaaatttcaaatgaacaaggatcctcaagcagcagcaacag 2838803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 10 - 292
Target Start/End: Complemental strand, 2856305 - 2856023
Alignment:
Q  10 gatgaagcagaaaccaatgaaggaataagaacatgggtgaagcatatgagagaagcatcatttcgcattgaagatataattgacgaataccttcggctga 109  Q
    ||||||||||| | |||||| ||||||||||| |||||||||||  ||||||||||||||||||||||||||||| | ||||| |||||||||||| |||    
T  2856305 gatgaagcagacatcaatgatggaataagaacttgggtgaagcagctgagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggttga 2856206  T
Q  110 tccatacggccaatcctcctggtagcggatctgtattcaacaagattacaagcccaatcaaaactttgattccccgtcacaaaattgcatcagagattca 209  Q
    | |||| ||||||||||| |||  | |||||| || |||||||| ||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||    
T  2856205 tacatagggccaatcctcatggacgtggatctttagtcaacaaggttacaagccgaatcaaaactttgattccccatcataaaattgcatcagagattca 2856106  T
Q  210 agacatcaagctgacaattcacggaatcaaggaaagaagcgtgaggtataactttcaaatttcaaatgaacaaggatcctcaa 292  Q
     ||||||||| || ||||||  ||||||||||||||||||  |||||||||||||||||||||| | || |||||||||||||    
T  2856105 ggacatcaagttgtcaattcgtggaatcaaggaaagaagccagaggtataactttcaaatttcacacgagcaaggatcctcaa 2856023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 10 - 306
Target Start/End: Original strand, 2768712 - 2769008
Alignment:
Q  10 gatgaagcagaaaccaatgaaggaataagaacatgggtgaagcatatgagagaagcatcatttcgcattgaagatataattgacgaataccttcggctga 109  Q
    ||||||||||| ||||| || ||||||||||| |||||||||||  ||||||||||||||||||||||||||||| | ||||| |||||||||||| |||    
T  2768712 gatgaagcagacaccaacgatggaataagaacttgggtgaagcagctgagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggttga 2768811  T
Q  110 tccatacggccaatcctcctggtagcggatctgtattcaacaagattacaagcccaatcaaaactttgattccccgtcacaaaattgcatcagagattca 209  Q
     ||||| |||||||| |||  |  |||||||| || ||  ||||||| |||||| |||||||||||||| ||||||||| |||||||||| |||||||||    
T  2768812 cccatagggccaatcgtcccagacgcggatctttaatcttcaagattgcaagcctaatcaaaactttgactccccgtcataaaattgcattagagattca 2768911  T
Q  210 agacatcaagctgacaattcacggaatcaaggaaagaagcgtgaggtataactttcaaatttcaaatgaacaaggatcctcaaacagcagcaacagt 306  Q
     ||||| ||| || ||||||  ||||||||||||||||||| |||||||| |||||||| |||| ||||||||||||||||||||||||| ||||||    
T  2768912 ggacattaagttgtcaattcgtggaatcaaggaaagaagcgagaggtatagctttcaaacttcacatgaacaaggatcctcaaacagcaggaacagt 2769008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 9 - 274
Target Start/End: Original strand, 5412549 - 5412814
Alignment:
Q  9 agatgaagcagaaaccaatgaaggaataagaacatgggtgaagcatatgagagaagcatcatttcgcattgaagatataattgacgaataccttcggctg 108  Q
    ||||||||| ||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||     
T  5412549 agatgaagcggacgccaatgatggaataagaacatgggtgaagcatatgagagaagcatcatttcgcattgaagatgtcattgacgaataccatcggcta 5412648  T
Q  109 atccatacggccaatcctcctggtagcggatctgtattcaacaagattacaagcccaatcaaaactttgattccccgtcacaaaattgcatcagagattc 208  Q
    || |||| || |||||||| |||  || ||||| || ||  ||||||| |||||   ||||||||||||||||||| |||  | || ||||| |||||||    
T  5412649 atgcatagggtcaatcctcttggatgcagatctttagtctgcaagattgcaagcttgatcaaaactttgattccccatcatcagatagcatctgagattc 5412748  T
Q  209 aagacatcaagctgacaattcacggaatcaaggaaagaagcgtgaggtataactttcaaatttcaa 274  Q
    | ||||| ||| || ||||||  ||||||||||||||||| | |||||||||||||||||||||||    
T  5412749 aggacattaagttgtcaattcgtggaatcaaggaaagaagtgagaggtataactttcaaatttcaa 5412814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 10 - 298
Target Start/End: Original strand, 2748641 - 2748929
Alignment:
Q  10 gatgaagcagaaaccaatgaaggaataagaacatgggtgaagcatatgagagaagcatcatttcgcattgaagatataattgacgaataccttcggctga 109  Q
    ||||||||||| || || || ||||||||||| |||||||||||  ||||||||||||||||||||||||||||| | ||||| |||||||||||||| |    
T  2748641 gatgaagcagacactaacgatggaataagaacttgggtgaagcagctgagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggctaa 2748740  T
Q  110 tccatacggccaatcctcctggtagcggatctgtattcaacaagattacaagcccaatcaaaactttgattccccgtcacaaaattgcatcagagattca 209  Q
    | |||| ||||||||||||| |  |||||||| || ||  ||||||| |||| | ||||||||||||||||||||||||  | || ||||| || |||||    
T  2748741 tgcatagggccaatcctcctagatgcggatctttagtcggcaagattgcaaggcaaatcaaaactttgattccccgtcatcatatagcatctgaaattca 2748840  T
Q  210 agacatcaagctgacaattcacggaatcaaggaaagaagcgtgaggtataactttcaaatttcaaatgaacaaggatcctcaaacagca 298  Q
     ||||| ||  |  ||||||  ||||||||||||||||| | |||||||||||||||||||||| | ||||||||| | |||| |||||    
T  2748841 ggacattaaattatcaattcgtggaatcaaggaaagaagtgagaggtataactttcaaatttcacacgaacaaggaacttcaagcagca 2748929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 9 - 290
Target Start/End: Original strand, 2818199 - 2818480
Alignment:
Q  9 agatgaagcagaaaccaatgaaggaataagaacatgggtgaagcatatgagagaagcatcatttcgcattgaagatataattgacgaataccttcggctg 108  Q
    ||||||||| ||  ||||||| |||||||||||||||||||||||  ||||||| ||||||||||||||||||||| | ||||| ||||||||||   ||    
T  2818199 agatgaagcggacgccaatgatggaataagaacatgggtgaagcaagtgagagatgcatcatttcgcattgaagatgtcattgatgaataccttcttttg 2818298  T
Q  109 atccatacggccaatcctcctggtagcggatctgtattcaacaagattacaagcccaatcaaaactttgattccccgtcacaaaattgcatcagagattc 208  Q
    ||||||| | ||||| |||| ||  || ||||| |  |   ||||||| ||||   ||| || ||||||| ||||||| |  ||||||||||||||||||    
T  2818299 atccataggaccaattctccaggatgcagatctttggtatgcaagattccaagattaatgaagactttgactccccgttatgaaattgcatcagagattc 2818398  T
Q  209 aagacatcaagctgacaattcacggaatcaaggaaagaagcgtgaggtataactttcaaatttcaaatgaacaaggatcctc 290  Q
    | ||||||||| || ||||||  ||||||||||||||||||| |||||||||||| ||||||||  ||||||||||||||||    
T  2818399 aggacatcaagttgtcaattcgtggaatcaaggaaagaagcgagaggtataacttccaaatttcgcatgaacaaggatcctc 2818480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 9 - 273
Target Start/End: Original strand, 2797003 - 2797267
Alignment:
Q  9 agatgaagcagaaaccaatgaaggaataagaacatgggtgaagcatatgagagaagcatcatttcgcattgaagatataattgacgaataccttcggctg 108  Q
    ||||||| | || |||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||| | ||||| |||||||||| ||||    
T  2797003 agatgaaaccgacaccaatgatggaataagaacttgggtgaagcatctgagagaagcatcatttcgcattgaagatgtcattgatgaataccttcagctg 2797102  T
Q  109 atccatacggccaatcctcctggtagcggatctgtattcaacaagattacaagcccaatcaaaactttgattccccgtcacaaaattgcatcagagattc 208  Q
    || |||| |||| ||||||| ||  |||||||| || ||  ||||||| |||| | ||||||||| |||||| ||| |||| | || ||||| ||||||     
T  2797103 atgcatagggcctatcctccgggatgcggatctttagtctgcaagattgcaagtctaatcaaaacattgatttcccttcaccagatagcatctgagatta 2797202  T
Q  209 aagacatcaagctgacaattcacggaatcaaggaaagaagcgtgaggtataactttcaaatttca 273  Q
    |  |||| ||| |  ||||||  ||||||||||||||||| | ||||||||||||||||||||||    
T  2797203 agaacattaagatatcaattcgtggaatcaaggaaagaagtgagaggtataactttcaaatttca 2797267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 9 - 305
Target Start/End: Original strand, 2790000 - 2790305
Alignment:
Q  9 agatgaagcagaaaccaatgaaggaataagaacatgggtgaagcatatgagagaagcatcatttcgcattgaagatataattgacgaataccttcggctg 108  Q
    |||||||||||| |||||||| ||||||||||| |||||||||||  ||||||||||||||||||||||||||||||| || || ||||||||||||||     
T  2790000 agatgaagcagacaccaatgatggaataagaacttgggtgaagcagctgagagaagcatcatttcgcattgaagatatcatcgatgaataccttcggctc 2790099  T
Q  109 atccatacgg------ccaatcctcctggtagcgg---atctgtattcaacaagattacaagcccaatcaaaactttgattccccgtcacaaaattgcat 199  Q
    || |||| ||      |||||||| ||||  || |   |||| |||||  ||||||| |||||| |||||||||||||||||||| |||  | || ||||    
T  2790100 atgcatagggcaaaatccaatccttctggatgccgtcaatctttattctgcaagattgcaagcctaatcaaaactttgattccccatcatcagatagcat 2790199  T
Q  200 cagagattcaagacatcaagctgacaattcacggaatcaaggaaagaagcgtgaggtataactttcaaatttcaaatgaacaaggatcctcaaacagcag 299  Q
    | |||||| || |||| ||| |  ||||||  ||||||||||||||||| | |||||||||||||||||||||| |   || |||||| |||| ||||||    
T  2790200 ctgagattaaaaacattaagatatcaattcgtggaatcaaggaaagaagtgagaggtataactttcaaatttcacagacaccaggatcatcaagcagcag 2790299  T
Q  300 caacag 305  Q
    ||||||    
T  2790300 caacag 2790305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 9 - 292
Target Start/End: Original strand, 2806903 - 2807195
Alignment:
Q  9 agatgaagcagaaaccaatgaaggaataagaacatgggtgaagcatatgagagaagcatcatttcgcattgaagatataattgacgaataccttcggctg 108  Q
    |||||||||||| || ||||| ||||| ||||| ||||| |||||  || | |||||||||||||||||||||||||| || || ||||||| |||||||    
T  2806903 agatgaagcagacacaaatgatggaattagaacttgggtaaagcagctgcgcgaagcatcatttcgcattgaagatatcatcgatgaataccatcggctg 2807002  T
Q  109 atccatacggccaa------tcctcctggtagcgg---atctgtattcaacaagattacaagcccaatcaaaactttgattccccgtcacaaaattgcat 199  Q
    || |||| ||| ||      |||||||||  ||||   ||||  |||| |||||||| ||||||   ||||||||||||||||||||||  | || ||||    
T  2807003 atgcatatggcaaaatccagtcctcctggatgcggtggatcttcattctacaagattgcaagcctggtcaaaactttgattccccgtcatcatatagcat 2807102  T
Q  200 cagagattcaagacatcaagctgacaattcacggaatcaaggaaagaagcgtgaggtataactttcaaatttcaaatgaacaaggatcctcaa 292  Q
    |  |||| | |||||| ||| || |  ||| |||||||||||||||||| | |||||||||||| ||||||||| ||||||||||||| ||||    
T  2807103 ctaagatccgagacattaaggtgtcggttcgcggaatcaaggaaagaagtgagaggtataacttacaaatttcacatgaacaaggatcatcaa 2807195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 2755699 - 2755782
Alignment:
Q  22 accaatgaaggaataagaacatgggtgaagcatatgagagaagcatcatttcgcattgaagatataattgacgaataccttcgg 105  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||    
T  2755699 accaatgatggaataagaacttgggtgaagcatatgagagaagcatcatttcgcattgaagatgtcattgatgaataccttcgg 2755782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 95
Target Start/End: Complemental strand, 3304417 - 3304343
Alignment:
Q  21 aaccaatgaaggaataagaacatgggtgaagcatatgagagaagcatcatttcgcattgaagatataattgacga 95  Q
    ||||||||||||| | | |||||||||||||||  | ||||||| ||| |||||||| |||||| |||| |||||    
T  3304417 aaccaatgaaggagtcaaaacatgggtgaagcaagtaagagaagtatcttttcgcatagaagatgtaatcgacga 3304343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 9 - 280
Target Start/End: Complemental strand, 6648 - 6377
Alignment:
Q  9 agatgaagcagaaaccaatgaaggaataagaacatgggtgaagcatatgagagaagcatcatttcgcattgaagatataattgacgaataccttcggctg 108  Q
    |||||||||||| || ||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||| | ||||| |||||||||||||||    
T  6648 agatgaagcagacactaatgatggaataagaacttgggtgaagcatatgagggaagcatcatttcgcattgaagatgttattgatgaataccttcggctg 6549  T
Q  109 atccatacggccaatcctcctggtagcggatctgtattcaacaagattacaagcccaatcaaaactttgattccccgtcacaaaattgcatcagagattc 208  Q
    ||||||| |||||| ||||||||  |||||||  || ||  |||||||  ||||| |||||||||||||||| | |  ||  | || ||||| |||||||    
T  6548 atccatagggccaaccctcctggatgcggatcattagtctgcaagattgtaagcctaatcaaaactttgatttctcagcatcagatagcatctgagattc 6449  T
Q  209 aagacatcaagctgacaattcacggaatcaaggaaagaagcgtgaggtataactttcaaatttcaaatgaac 280  Q
    | ||||| |||||| ||||||  ||||||||||| ||||| |  ||||||||||||||||||| | ||||||    
T  6448 aggacataaagctgtcaattcgtggaatcaaggacagaagtgaaaggtataactttcaaattttacatgaac 6377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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