View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_low_56 (Length: 322)
Name: NF2014_low_56
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_low_56 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 41066520 - 41066828
Alignment:
| Q |
1 |
agcagcagtactattttttctgtgttactactctctatttttctctgtatcatttgatacttgttggatattaaaattctcgtatcttcacttaaagtta |
100 |
Q |
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||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41066520 |
agcagcagtactagtttttctatgttactactctctatttttctctttatcatttgatacttgttggatattaaaattctcgtatcttcacttaaagtta |
41066619 |
T |
|
| Q |
101 |
ctgataaagatgtagacagttcttttatccttcatcatcaaactatatatagttctcttttgtaatggatttacagcaaaggttaaagaaaaggacaaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41066620 |
ctgataaagatgtagacagttcttttatccttcatcatcaaactatatatagttctcttttgtaatggatttacagcaaaggttaaagaaaaggacaaag |
41066719 |
T |
|
| Q |
201 |
tggaagcattgtacaagcatgtgtggaacttcagtacgtgcggaagatatataaaagaaatgactcatatagttcgccccttaaagttttaagtaaagat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41066720 |
tggaagcattgtacaagcatgtgtggaacttcagtacgtgcggaagatatataaaagaaatgactcatatagttcgccccttaaagttttaagtaaagat |
41066819 |
T |
|
| Q |
301 |
gttgtgttc |
309 |
Q |
| |
|
||||||||| |
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| T |
41066820 |
gttgtgttc |
41066828 |
T |
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