View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_low_60 (Length: 314)
Name: NF2014_low_60
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_low_60 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 16 - 298
Target Start/End: Complemental strand, 27822383 - 27822101
Alignment:
| Q |
16 |
aaaatatggcttgtctccaagctcaccttctagagtcttcaagcattctataaacttctttttaccctcttcttgttcttcaccctttcctgtccacacc |
115 |
Q |
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| T |
27822383 |
aaaatatggcttgtctccaagctcatcttctagagtcttcaagcattctataaacttctttttaccctcttcttgttcttcaccctttcctgtccacacc |
27822284 |
T |
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| Q |
116 |
ttctttccaatgttgtatacctacatcaattagaatccaataaattaaaccatgataccctatgaatcaactctttaccaaaattatatgtttggtgaaa |
215 |
Q |
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| T |
27822283 |
ttctttccaatgttgtatacctacatcaattagaatccaataaattaaaccatgataccctatgaatcaactctttaaaaaaattatatgtttggtaaaa |
27822184 |
T |
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| Q |
216 |
acacaaaaatttactttattctatatttctagtgtgtcctctcatgtaaactgtataaattgttagccactcgggcttgaatg |
298 |
Q |
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| T |
27822183 |
acacaaatatttactttattctatatttctagtgtgtcctctcatgtaaactgtataaattgttagccacttgggcttgaatg |
27822101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 16 - 191
Target Start/End: Complemental strand, 27826322 - 27826147
Alignment:
| Q |
16 |
aaaatatggcttgtctccaagctcaccttctagagtcttcaagcattctataaacttctttttaccctcttcttgttcttcaccctttcctgtccacacc |
115 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| || |||||||||||| |||||||| |||| | | |
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| T |
27826322 |
aaaatatggcttgtctccaagctcatcttctagagtcttcaagccttctataaacttctttttaccttcctcttgttcttcaacctttcctttccatagc |
27826223 |
T |
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| Q |
116 |
ttctttccaatgttgtatacctacatcaattagaatccaa-taaattaaaccatgataccctatgaatcaactcttt |
191 |
Q |
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| T |
27826222 |
ttccttcgaatgctgtatacctacatcaattagaatccaacaaaattaagccatgataccctatgaat-aactcttt |
27826147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 234
Target Start/End: Complemental strand, 27826132 - 27826093
Alignment:
| Q |
195 |
aaaattatatgtttggtgaaaacacaaaaatttactttat |
234 |
Q |
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||||||||||||||||||||||||| |||||| ||||||| |
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| T |
27826132 |
aaaattatatgtttggtgaaaacaccaaaattgactttat |
27826093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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