View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2014_low_61 (Length: 312)

Name: NF2014_low_61
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2014_low_61
NF2014_low_61
[»] chr4 (3 HSPs)
chr4 (14-224)||(25109381-25109590)
chr4 (124-198)||(24156568-24156642)
chr4 (116-200)||(19149844-19149928)
[»] chr3 (3 HSPs)
chr3 (17-201)||(43367656-43367840)
chr3 (148-206)||(49147676-49147734)
chr3 (28-101)||(47158821-47158894)
[»] chr6 (7 HSPs)
chr6 (14-201)||(28493690-28493877)
chr6 (14-201)||(29806099-29806286)
chr6 (145-206)||(16498196-16498257)
chr6 (124-199)||(31930700-31930775)
chr6 (28-101)||(6180311-6180384)
chr6 (76-158)||(7469845-7469927)
chr6 (145-206)||(9756867-9756928)
[»] chr2 (4 HSPs)
chr2 (145-206)||(7026851-7026912)
chr2 (145-206)||(35297213-35297274)
chr2 (115-198)||(44024264-44024347)
chr2 (145-206)||(14688740-14688801)
[»] chr1 (3 HSPs)
chr1 (145-206)||(44094031-44094092)
chr1 (121-200)||(45516395-45516474)
chr1 (71-157)||(42767690-42767776)
[»] chr7 (1 HSPs)
chr7 (145-206)||(42128586-42128647)
[»] chr5 (2 HSPs)
chr5 (145-206)||(31112082-31112143)
chr5 (28-152)||(5122864-5122988)
[»] scaffold0015 (1 HSPs)
scaffold0015 (145-206)||(14149-14210)
[»] chr8 (4 HSPs)
chr8 (145-206)||(29259354-29259415)
chr8 (28-100)||(13075227-13075299)
chr8 (28-95)||(40736660-40736727)
chr8 (121-200)||(13821480-13821557)


Alignment Details
Target: chr4 (Bit Score: 151; Significance: 7e-80; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 14 - 224
Target Start/End: Complemental strand, 25109590 - 25109381
Alignment:
Q  14 ttcttatccaaaatatcaaagaccacatgagttctcgaaatttcttccttcaccgttcgctcagagaaggcaatcagtgtgcggattttagaatcaaatt 113  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||| |    
T  25109590 ttcttatccaaaatatcaaagac-acatgagttctcgaaatttcttccttcaccattcgctcagagaaggcaatcagtgtgcggattttaggaccaaact 25109492  T
Q  114 tagagtctcgaatgatgtcgagttgtctattcactcttctcctccagaggacctgctgcctctgctcaagatggatgaattaggagttctcttcctgaga 213  Q
    ||||| |||||||||||||||||||||||||||||||||| || |||||||||| |||||||| ||||||| |||||||||||||||| | ||||||||     
T  25109491 tagagcctcgaatgatgtcgagttgtctattcactcttcttcttcagaggacctactgcctctactcaagacggatgaattaggagtttttttcctgagg 25109392  T
Q  214 gcctaacctcg 224  Q
    |||||||||||    
T  25109391 gcctaacctcg 25109381  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 124 - 198
Target Start/End: Complemental strand, 24156642 - 24156568
Alignment:
Q  124 aatgatgtcgagttgtctattcactcttctcctccagaggacctgctgcctctgctcaagatggatgaattagga 198  Q
    |||||||| |||||||| || ||||||||||| || |||||||||||||||||| | |||| |||||||||||||    
T  24156642 aatgatgttgagttgtccatccactcttctccgccggaggacctgctgcctctgttaaagacggatgaattagga 24156568  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 200
Target Start/End: Complemental strand, 19149928 - 19149844
Alignment:
Q  116 gagtctcgaatgatgtcgagttgtctattcactcttctcctccagaggacctgctgcctctgctcaagatggatgaattaggagt 200  Q
    |||| |||||||||||  || |||| ||||||||||||||||| ||||||||| |||||||||| | ||  ||||||||||||||    
T  19149928 gagtttcgaatgatgttaagctgtccattcactcttctcctccggaggacctgttgcctctgctaaggacagatgaattaggagt 19149844  T

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Target: chr3 (Bit Score: 69; Significance: 6e-31; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 43367656 - 43367840
Alignment:
Q  17 ttatccaaaatatcaaagaccacatgagttctcgaaatttcttccttcaccgttcgctcagagaaggcaatcagtgtgcggattttagaatcaaatttag 116  Q
    ||||| |||| |||||||||  ||||||| || ||||||||| |||||| | |||||||||||||||||||||| ||||||| |||  || |||  |  |    
T  43367656 ttatctaaaacatcaaagacatcatgagtactagaaatttctcccttcagcattcgctcagagaaggcaatcagcgtgcggactttgtaaccaagctagg 43367755  T
Q  117 agtctcgaatgatgtcgagttgtctattcactcttctcctccagaggacctgctgcctctgctcaagatggatgaattaggagtt 201  Q
    ||| |||||||||| ||||||||| || |||||||| |||||| |||||||||| |||||||| | || ||||||| ||||||||    
T  43367756 agtttcgaatgatgacgagttgtcaatccactcttcacctccaaaggacctgctacctctgcttaggacggatgaactaggagtt 43367840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 206
Target Start/End: Complemental strand, 49147734 - 49147676
Alignment:
Q  148 tcttctcctccagaggacctgctgcctctgctcaagatggatgaattaggagttctctt 206  Q
    |||||||||||||||||||||||||||||||| | || ||||||||||||||| |||||    
T  49147734 tcttctcctccagaggacctgctgcctctgcttaggacggatgaattaggagtcctctt 49147676  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 47158894 - 47158821
Alignment:
Q  28 atcaaagaccacatgagttctcgaaatttcttccttcaccgttcgctcagagaaggcaatcagtgtgcggattt 101  Q
    |||||||||| ||| ||| |  |||||||||  ||||||| |||||| |||||||||||||| ||||| |||||    
T  47158894 atcaaagacctcatcagtgcgtgaaatttctctcttcaccattcgctaagagaaggcaatcaatgtgcagattt 47158821  T

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Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 201
Target Start/End: Original strand, 28493690 - 28493877
Alignment:
Q  14 ttcttatccaaaatatcaaagaccacatgagttctcgaaatttcttccttcaccgttcgctcagagaaggcaatcagtgtgcggattttagaatcaaatt 113  Q
    ||||||||||||| |||||||||  ||||||| || ||||||||| |||||  | ||| ||||||||||||||||||||||| || |||     |||  |    
T  28493690 ttcttatccaaaacatcaaagacatcatgagtactagaaatttctcccttcggcattcactcagagaaggcaatcagtgtgccgactttctggccaagct 28493789  T
Q  114 tagagtctcgaatgatgtcgagttgtctattcactcttctcctccagaggacctgctgcctctgctcaagatggatgaattaggagtt 201  Q
    | |||  |||||||||| |||||||||||| |||||||| ||||||||| |||||||||||||||| | |||||||||  ||||||||    
T  28493790 tcgagcttcgaatgatgacgagttgtctatccactcttcacctccagagaacctgctgcctctgcttaggatggatgagctaggagtt 28493877  T

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Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 201
Target Start/End: Original strand, 29806099 - 29806286
Alignment:
Q  14 ttcttatccaaaatatcaaagaccacatgagttctcgaaatttcttccttcaccgttcgctcagagaaggcaatcagtgtgcggattttagaatcaaatt 113  Q
    ||||||||||||| |||||||||  ||||||| || ||||||||| |||||  | ||| ||||||||||||||||||||||| || |||     |||  |    
T  29806099 ttcttatccaaaacatcaaagacatcatgagtactagaaatttctcccttcggcattcactcagagaaggcaatcagtgtgccgactttctggccaagct 29806198  T
Q  114 tagagtctcgaatgatgtcgagttgtctattcactcttctcctccagaggacctgctgcctctgctcaagatggatgaattaggagtt 201  Q
    | |||  |||||||||| |||||||||||| |||||||| ||||||||| |||||||||||||||| | |||||||||  ||||||||    
T  29806199 tcgagcttcgaatgatgacgagttgtctatccactcttcacctccagagaacctgctgcctctgcttaggatggatgagctaggagtt 29806286  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 16498257 - 16498196
Alignment:
Q  145 cactcttctcctccagaggacctgctgcctctgctcaagatggatgaattaggagttctctt 206  Q
    ||||||||||||||||||||||||||||||| ||| | ||  |||||||||||||| |||||    
T  16498257 cactcttctcctccagaggacctgctgcctccgcttaggacagatgaattaggagtcctctt 16498196  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 199
Target Start/End: Complemental strand, 31930775 - 31930700
Alignment:
Q  124 aatgatgtcgagttgtctattcactcttctcctccagaggacctgctgcctctgctcaagatggatgaattaggag 199  Q
    |||||||| |||| ||| ||||||||||| ||||| ||||||||||| |||||| | | || ||||||||||||||    
T  31930775 aatgatgttgagtcgtccattcactcttcccctccggaggacctgctacctctgataaggacggatgaattaggag 31930700  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 101
Target Start/End: Original strand, 6180311 - 6180384
Alignment:
Q  28 atcaaagaccacatgagttctcgaaatttcttccttcaccgttcgctcagagaaggcaatcagtgtgcggattt 101  Q
    |||||||||| ||| ||| | ||||||||||  ||||||| |||||| |||||||||||||| ||||| |||||    
T  6180311 atcaaagacctcatcagtgcgcgaaatttctctcttcaccattcgctaagagaaggcaatcaatgtgcagattt 6180384  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 158
Target Start/End: Complemental strand, 7469927 - 7469845
Alignment:
Q  76 agagaaggcaatcagtgtgcggattttagaatcaaatttagagtctcgaatgatgtcgagttgtctattcactcttctcctcc 158  Q
    ||||| |||||||| ||||||||||| |   ||||| |||||  ||||| ||||||||| ||| | |||||||||||||||||    
T  7469927 agagagggcaatcaatgtgcggatttcatggtcaaacttagaacctcgactgatgtcgacttgacaattcactcttctcctcc 7469845  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 9756928 - 9756867
Alignment:
Q  145 cactcttctcctccagaggacctgctgcctctgctcaagatggatgaattaggagttctctt 206  Q
    |||||||||||| || ||||| |||||||||| || | || ||||||||||||||| |||||    
T  9756928 cactcttctccttcataggacatgctgcctcttcttaggacggatgaattaggagtcctctt 9756867  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 7026912 - 7026851
Alignment:
Q  145 cactcttctcctccagaggacctgctgcctctgctcaagatggatgaattaggagttctctt 206  Q
    ||||||||||||||||||||||||||||||||||| | || ||||||||||||||| |||||    
T  7026912 cactcttctcctccagaggacctgctgcctctgcttaggacggatgaattaggagtcctctt 7026851  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 35297213 - 35297274
Alignment:
Q  145 cactcttctcctccagaggacctgctgcctctgctcaagatggatgaattaggagttctctt 206  Q
    |||||||||||| |||||||||||||||||||||| | || |||||||||||||||||||||    
T  35297213 cactcttctccttcagaggacctgctgcctctgcttaggacggatgaattaggagttctctt 35297274  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 198
Target Start/End: Original strand, 44024264 - 44024347
Alignment:
Q  115 agagtctcgaatgatgtcgagttgtctattcactcttctcctccagaggacctgctgcctctgctcaagatggatgaattagga 198  Q
    ||||| || |||||||| ||| |||| || ||||||||||| || |||||||||||||||||| | |||| |||||||||||||    
T  44024264 agagtttctaatgatgttgagctgtccatccactcttctccaccggaggacctgctgcctctgttaaagacggatgaattagga 44024347  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 14688740 - 14688801
Alignment:
Q  145 cactcttctcctccagaggacctgctgcctctgctcaagatggatgaattaggagttctctt 206  Q
    ||||||||||||| ||||||||||||||||||| | | || ||||||||||||||| |||||    
T  14688740 cactcttctcctctagaggacctgctgcctctggttaggacggatgaattaggagtcctctt 14688801  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 44094031 - 44094092
Alignment:
Q  145 cactcttctcctccagaggacctgctgcctctgctcaagatggatgaattaggagttctctt 206  Q
    ||||||||||||||||||||||||||||||||||| | || |||||| |||||||| |||||    
T  44094031 cactcttctcctccagaggacctgctgcctctgcttaggacggatgatttaggagtcctctt 44094092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 200
Target Start/End: Complemental strand, 45516474 - 45516395
Alignment:
Q  121 tcgaatgatgtcgagttgtctattcactcttctcctccagaggacctgctgcctctgctcaagatggatgaattaggagt 200  Q
    ||||||||||| || ||| || | ||||||||||||| ||||||||| ||||||||||| | || |||||||||||||||    
T  45516474 tcgaatgatgttgaattgactctccactcttctcctcgagaggacctactgcctctgcttaggacggatgaattaggagt 45516395  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 71 - 157
Target Start/End: Original strand, 42767690 - 42767776
Alignment:
Q  71 cgctcagagaaggcaatcagtgtgcggattttagaatcaaatttagagtctcgaatgatgtcgagttgtctattcactcttctcctc 157  Q
    |||| ||||| |||||||| |||||||||||||    ||||||||||| ||||| ||||||||| ||| | ||||||||||||||||    
T  42767690 cgcttagagagggcaatcaatgtgcggattttatggccaaatttagagcctcgactgatgtcgacttgacaattcactcttctcctc 42767776  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 42128586 - 42128647
Alignment:
Q  145 cactcttctcctccagaggacctgctgcctctgctcaagatggatgaattaggagttctctt 206  Q
    |||||||||| |||||||||||||||||||||||| | ||  |||||||||||||| |||||    
T  42128586 cactcttctcttccagaggacctgctgcctctgcttaggacagatgaattaggagtcctctt 42128647  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 31112143 - 31112082
Alignment:
Q  145 cactcttctcctccagaggacctgctgcctctgctcaagatggatgaattaggagttctctt 206  Q
    |||| |||||||||||||||||||||||| ||||| | || ||||||||||||||| |||||    
T  31112143 cactattctcctccagaggacctgctgccgctgcttaggacggatgaattaggagtcctctt 31112082  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 28 - 152
Target Start/End: Original strand, 5122864 - 5122988
Alignment:
Q  28 atcaaagaccacatgagttctcgaaatttcttccttcaccgttcgctcagagaaggcaatcagtgtgcggattttagaatcaaatttagagtctcgaatg 127  Q
    |||||||||| |||||||||  ||||||||   ||||| | ||| ||||||||||||||||||||||| ||||  |     ||  |||||||||||||||    
T  5122864 atcaaagacctcatgagttcaagaaatttcactcttcagcattcactcagagaaggcaatcagtgtgcagattacatggctaagcttagagtctcgaatg 5122963  T
Q  128 atgtcgagttgtctattcactcttc 152  Q
    ||||||| |||  ||||||||||||    
T  5122964 atgtcgatttggttattcactcttc 5122988  T

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Target: scaffold0015 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 14149 - 14210
Alignment:
Q  145 cactcttctcctccagaggacctgctgcctctgctcaagatggatgaattaggagttctctt 206  Q
    ||||||||||||||| ||||| ||| ||||||||| | || ||||||||||||||| |||||    
T  14149 cactcttctcctccaaaggacatgcagcctctgcttaggacggatgaattaggagtcctctt 14210  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 29259354 - 29259415
Alignment:
Q  145 cactcttctcctccagaggacctgctgcctctgctcaagatggatgaattaggagttctctt 206  Q
    ||||||||||||||| ||||| ||| ||||||||| | || ||||||||||||||| |||||    
T  29259354 cactcttctcctccaaaggacatgccgcctctgcttaggacggatgaattaggagtcctctt 29259415  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 100
Target Start/End: Complemental strand, 13075299 - 13075227
Alignment:
Q  28 atcaaagaccacatgagttctcgaaatttcttccttcaccgttcgctcagagaaggcaatcagtgtgcggatt 100  Q
    |||||||||| || ||||||| ||||||||    |||| | ||||||||||||||||||||||||||| ||||    
T  13075299 atcaaagacctcacgagttctagaaatttcactgttcaacattcgctcagagaaggcaatcagtgtgcagatt 13075227  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 40736727 - 40736660
Alignment:
Q  28 atcaaagaccacatgagttctcgaaatttcttccttcaccgttcgctcagagaaggcaatcagtgtgc 95  Q
    |||||||||| |||  || | ||||||||||  ||||||| |||||| ||||||||||||||||||||    
T  40736727 atcaaagacctcatcggtgcgcgaaatttctctcttcaccattcgctaagagaaggcaatcagtgtgc 40736660  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 200
Target Start/End: Original strand, 13821480 - 13821557
Alignment:
Q  121 tcgaatgatgtcgagttgtctattcactcttctcctccagaggacctgctgcctctgctcaagatggatgaattaggagt 200  Q
    ||||||||||| || ||| || | |||||||||||   ||||||||||||||||||||| | || | |||||||||||||    
T  13821480 tcgaatgatgttgaattgactctccactcttctccg--agaggacctgctgcctctgcttaggacgaatgaattaggagt 13821557  T

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