View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2014_low_62 (Length: 312)

Name: NF2014_low_62
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2014_low_62
NF2014_low_62
[»] chr6 (3 HSPs)
chr6 (5-103)||(2481464-2481562)
chr6 (210-296)||(2481246-2481332)
chr6 (210-296)||(5365349-5365435)
[»] chr4 (4 HSPs)
chr4 (5-103)||(12632555-12632653)
chr4 (5-103)||(27108262-27108360)
chr4 (210-296)||(12632785-12632871)
chr4 (210-296)||(27108492-27108578)
[»] chr1 (4 HSPs)
chr1 (5-103)||(44680875-44680973)
chr1 (5-103)||(23272117-23272215)
chr1 (210-296)||(23272347-23272432)
chr1 (210-296)||(44681105-44681191)
[»] chr8 (2 HSPs)
chr8 (116-296)||(18616319-18616505)
chr8 (47-102)||(18616199-18616254)
[»] chr3 (3 HSPs)
chr3 (1-106)||(4708773-4708877)
chr3 (1-101)||(4709045-4709145)
chr3 (216-296)||(4708525-4708605)
[»] chr5 (1 HSPs)
chr5 (6-68)||(39789350-39789412)
[»] chr2 (1 HSPs)
chr2 (26-91)||(13510120-13510187)


Alignment Details
Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 2481562 - 2481464
Alignment:
Q  5 attgagaacccttgttgataagcatatctcttataaaagacaaatgcttcttcttcactaagaaaaatttgaccaacaaagggaacacaatttgtctca 103  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2481562 attgagaacccttgttgataagcatatctcttataaaagacataggcttcttcttcactaagaaaaatttgaccaacaaatggaacacaatttgtctca 2481464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 296
Target Start/End: Complemental strand, 2481332 - 2481246
Alignment:
Q  210 aatatcttctattagactttcattcaaatcaaaacttattttgttgttggtctctataacactaacatcatccattatgttctttat 296  Q
    ||||||||||||| ||  |||||||||||||||||||||||| ||||| |||| | || |||||| |  |||||||||||| |||||    
T  2481332 aatatcttctattggatattcattcaaatcaaaacttattttattgtttgtctttgtagcactaatactatccattatgttatttat 2481246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 296
Target Start/End: Original strand, 5365349 - 5365435
Alignment:
Q  210 aatatcttctattagactttcattcaaatcaaaacttattttgttgttggtctctataacactaacatcatccattatgttctttat 296  Q
    |||||||||| || ||  |||||||||||||||||||||||| ||||| |||| | || |||||| || |||||||||||| |||||    
T  5365349 aatatcttcttttggatattcattcaaatcaaaacttattttattgtttgtctttgtagcactaatattatccattatgttatttat 5365435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 5 - 103
Target Start/End: Original strand, 12632555 - 12632653
Alignment:
Q  5 attgagaacccttgttgataagcatatctcttataaaagacaaatgcttcttcttcactaagaaaaatttgaccaacaaagggaacacaatttgtctca 103  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12632555 attgagaacccttgttgataagcatatctcttataaaagacataggcttcttcttcactaagaaaaatttgaccaacaaatggaacacaatttgtctca 12632653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 5 - 103
Target Start/End: Original strand, 27108262 - 27108360
Alignment:
Q  5 attgagaacccttgttgataagcatatctcttataaaagacaaatgcttcttcttcactaagaaaaatttgaccaacaaagggaacacaatttgtctca 103  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  27108262 attgagaacccttgttgataagcatatctcttataaaagacataggcttcttcttcactaagaaaaatttgaccaacaaatggaacacaatttgtctca 27108360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 296
Target Start/End: Original strand, 12632785 - 12632871
Alignment:
Q  210 aatatcttctattagactttcattcaaatcaaaacttattttgttgttggtctctataacactaacatcatccattatgttctttat 296  Q
    ||||||||||||| ||  |||||||||||||||||||||||| ||||| |||| | || |||||| || |||||||||||| |||||    
T  12632785 aatatcttctattggatattcattcaaatcaaaacttattttattgtttgtctttgtagcactaatattatccattatgttatttat 12632871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 296
Target Start/End: Original strand, 27108492 - 27108578
Alignment:
Q  210 aatatcttctattagactttcattcaaatcaaaacttattttgttgttggtctctataacactaacatcatccattatgttctttat 296  Q
    ||||||||||||| ||  |||||||||||||||||||||||| ||||| |||| | || |||||| |  |||||||||||| |||||    
T  27108492 aatatcttctattggatattcattcaaatcaaaacttattttattgtttgtctttgtagcactaatactatccattatgttatttat 27108578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 5 - 103
Target Start/End: Original strand, 44680875 - 44680973
Alignment:
Q  5 attgagaacccttgttgataagcatatctcttataaaagacaaatgcttcttcttcactaagaaaaatttgaccaacaaagggaacacaatttgtctca 103  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  44680875 attgagaacccttgttgataagcatatctcttataaaagacataggcttcttcttcactaagaaaaatttgaccaacaaatggaacacaatttgtctca 44680973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 5 - 103
Target Start/End: Original strand, 23272117 - 23272215
Alignment:
Q  5 attgagaacccttgttgataagcatatctcttataaaagacaaatgcttcttcttcactaagaaaaatttgaccaacaaagggaacacaatttgtctca 103  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  23272117 attgagaacccttgttgataagcatatctcttataaaagacataagcttcttcttcactaagaaaaatttgacaaacaaatggaacacaatttgtctca 23272215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 296
Target Start/End: Original strand, 23272347 - 23272432
Alignment:
Q  210 aatatcttctattagactttcattcaaatcaaaacttattttgttgttggtctctataacactaacatcatccattatgttctttat 296  Q
    ||||||||||||| ||  |||||||||||||||||||||||| |||||||||| | || |||||| || || ||||||||| |||||    
T  23272347 aatatcttctattggatattcattcaaatcaaaacttattttattgttggtctttgtagcactaatattat-cattatgttatttat 23272432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 296
Target Start/End: Original strand, 44681105 - 44681191
Alignment:
Q  210 aatatcttctattagactttcattcaaatcaaaacttattttgttgttggtctctataacactaacatcatccattatgttctttat 296  Q
    ||||||||||||| ||  |||||||||||||||||||||||| ||||| |||| | || |||||| |  |||||||||||| |||||    
T  44681105 aatatcttctattggatattcattcaaatcaaaacttattttattgtttgtctttgtagcactaatactatccattatgttatttat 44681191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 116 - 296
Target Start/End: Original strand, 18616319 - 18616505
Alignment:
Q  116 tctttctcagaacttcctatgttatcaaccactaacaagtccttcactaaatcatgctcag---------tcattatttctgaacaaa--ttttctaaag 204  Q
    ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |          | ||| ||| | || ||   ||||||||||    
T  18616319 tctttctcagaactttctatgttatcaactactaacaagtccttcactaaatcatgctaaaaatgctgaataattgtttgtaaataacccttttctaaag 18616418  T
Q  205 caattaatatcttctattagactttcattcaaatcaaaacttattttgttgttggtctctataacactaacatcatccattatgttctttat 296  Q
    ||||    ||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||    
T  18616419 caat----atcttct-ttagactttcattcaaatcaaaacttattttattgttgatctctataacactaacataatccattatgttctttat 18616505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 102
Target Start/End: Original strand, 18616199 - 18616254
Alignment:
Q  47 aatgcttcttcttcactaagaaaaatttgaccaacaaagggaacacaatttgtctc 102  Q
    |||||||||| |||| ||||||||||||||||| ||||   |||||||||||||||    
T  18616199 aatgcttctttttcattaagaaaaatttgaccagcaaaaaaaacacaatttgtctc 18616254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 4708877 - 4708773
Alignment:
Q  1 ttttattgagaacccttgttgataagcatatctcttataaaagacaaatgcttcttcttcactaagaaaaatttgaccaacaaagggaacacaatttgtc 100  Q
    |||||||||||||||||||||||||||||||||||||||||| | | ||||||||| |||||||| ||||||| ||||||||||| ||||| ||||||||    
T  4708877 ttttattgagaacccttgttgataagcatatctcttataaaa-agacatgcttctttttcactaaaaaaaattcgaccaacaaagagaacataatttgtc 4708779  T
Q  101 tcatta 106  Q
    ||||||    
T  4708778 tcatta 4708773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 4709045 - 4709145
Alignment:
Q  1 ttttattgagaacccttgttgataagcatatctcttataaaagacaaatgcttcttcttcactaagaaaaatttgaccaacaaagggaacacaatttgtc 100  Q
    ||||||||| ||  |||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  4709045 ttttattgacaattcttgctgataagcatatctcttataaaagacatatccttcttcttcactaagaaaaatttgaccaacaaaggaaacaaaatttgtc 4709144  T
Q  101 t 101  Q
    |    
T  4709145 t 4709145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 296
Target Start/End: Complemental strand, 4708605 - 4708525
Alignment:
Q  216 ttctattagactttcattcaaatcaaaacttattttgttgttggtctctataacactaacatcatccattatgttctttat 296  Q
    ||||||| ||| |||||||||||||||||||||||| ||| |||||| | || || || ||||| |||||| ||| |||||    
T  4708605 ttctattggacattcattcaaatcaaaacttattttattgatggtctatgtagcattagcatcaaccattaagttatttat 4708525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 39789350 - 39789412
Alignment:
Q  6 ttgagaacccttgttgataagcatatctcttataaaagacaaatgcttcttcttcactaagaa 68  Q
    |||||||||| |||||||| |||||| |||||||||||| |||| ||||||||||||||||||    
T  39789350 ttgagaacccgtgttgatatgcatatatcttataaaagataaattcttcttcttcactaagaa 39789412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 13510187 - 13510120
Alignment:
Q  26 gcatatctcttataaaagacaaatgcttcttcttcactaagaaaa--atttgaccaacaaagggaaca 91  Q
    |||||||||||||| |||||||||| |||||| |  |||||||||  |||||||||||||| ||||||    
T  13510187 gcatatctcttatagaagacaaatgtttcttccttgctaagaaaaatatttgaccaacaaaaggaaca 13510120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University