View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_low_68 (Length: 291)
Name: NF2014_low_68
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_low_68 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 7 - 291
Target Start/End: Complemental strand, 27822665 - 27822381
Alignment:
| Q |
7 |
tagattattctccacacatagtttctcctccggttcccatgcaatccccaacaatctctattcaagtccatgtttctgtttatattgcattgcaaaacca |
106 |
Q |
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| T |
27822665 |
tagattattctccacacatagtttctcctccggttcccatgcaatccccaacaatctctattcaagtccatgtttctgtttatattgcattgcaaaacca |
27822566 |
T |
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| Q |
107 |
tagattttgtgagggtgaggaagtgactttgccacactctcttttttcatacaccttttggcccaagctacaagcttaggacactctttctcaatgctta |
206 |
Q |
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| T |
27822565 |
tagattttgtgagggtgaggaagtgattttgccacactctcttttttcatacaccttttggcccaagctacaagcttaggacactctttctcaatgctta |
27822466 |
T |
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| Q |
207 |
gtttcccatatatctcgtaagtgtaaaaccaactagtgaagggtataagagccacatcaacatacccaaactcatctccaccaaa |
291 |
Q |
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| T |
27822465 |
atttcccatatgtctcgtaagtgtaaaaccaaccagtgaagggtataagagccacatcaacatacccaaactcatctccaccaaa |
27822381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 29 - 291
Target Start/End: Complemental strand, 27826583 - 27826320
Alignment:
| Q |
29 |
ttctcctccggttcccatgcaatcccca-acaatctctattcaagtccatgtttctgtttatattgcattgcaaaaccatagattttgtgagggtgagga |
127 |
Q |
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| T |
27826583 |
ttcttctccggtccccatgcaatcccaacaaaatctctattcaagtctatgtttctgtttatattgcattgcaaaaccatagattttgtgagggtgagga |
27826484 |
T |
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| Q |
128 |
agtgactttgccacactctcttttttcatacaccttttggcccaagctacaagcttaggacactctttctcaatgcttagtttcccatatatctcgtaag |
227 |
Q |
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| T |
27826483 |
agtgactttgccacactctctttttccatacaccttttggcccaagctacaagcttaggacactctttctcaatgcttagtttcccatatatctcgtaag |
27826384 |
T |
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| Q |
228 |
tgtaaaaccaactagtgaagggtataagagccacatcaacatacccaaactcatctccaccaaa |
291 |
Q |
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| T |
27826383 |
tgtaaaaccaactagtgaagggtataagagccacatcaacatacccaaactcatctccaccaaa |
27826320 |
T |
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