View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_low_7 (Length: 502)
Name: NF2014_low_7
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 39 - 396
Target Start/End: Original strand, 40339774 - 40340134
Alignment:
| Q |
39 |
aaatgaagaccaaaactttattannnnnnnctaaaactatggggacgnnnnnnntacatttaaactgactaatttttatatcaatggtttttaagctcaa |
138 |
Q |
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| T |
40339774 |
aaatgaagaccaaaactttattatttttttctaaaactatggggacgaaaaaaatacatttaaactgactaatttttatatcaatggtttttaagctcaa |
40339873 |
T |
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| Q |
139 |
tacttccaatcacataagtttatctgtgatgtcacttatatagaatattttggtcccgtatacacaacaaacattcttatttaatctcttactatttatc |
238 |
Q |
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| T |
40339874 |
tacttccaatcacataagtttatctgtaatgtcacttatatagaatattttggtcccgtatacacaacaaacattcttatttaatctcttactatttatc |
40339973 |
T |
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| Q |
239 |
attaataatattgtagatttctaatttctctatacaaacatgatgacacttcgtcatatcaagtat---ttaatctatcttaggagttgttttacattca |
335 |
Q |
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| T |
40339974 |
attaataatattgtagatttctaatttctctatacaaacatgatgacacttcgtcatatcaagtattaattaatctatcttagaagttgtcttacattca |
40340073 |
T |
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| Q |
336 |
ttttaacaagtttttgtatattttagttgagttttgtaataattcaaatgaaggttcacga |
396 |
Q |
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| T |
40340074 |
ttttaacaagtttttgtatattttagttgagttttgtaataattcaaatgaaggttcacga |
40340134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 38
Target Start/End: Original strand, 40339719 - 40339753
Alignment:
| Q |
4 |
aaaaatcatctagaggattaaaaaactgagtttta |
38 |
Q |
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| T |
40339719 |
aaaaatcatctagaggattaaaaaactgagtttta |
40339753 |
T |
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