View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2014_low_73 (Length: 278)
Name: NF2014_low_73
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2014_low_73 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 9 - 278
Target Start/End: Original strand, 4529217 - 4529486
Alignment:
| Q |
9 |
aggggttcattcaacaatcaaatgatgttagacgcgtagaagatgttggccatgagtacttcatgagtttgctgtcaatgtccttctttcaggatatcat |
108 |
Q |
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| T |
4529217 |
aggggtttatccaaccatcaaatgatgttagacgtgtagaagatgttggccatgagtacttcatgagtttgctgtcaatgtccttcttccaagatatcac |
4529316 |
T |
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| Q |
109 |
tgtagacgattatggtgacattagtaattgtagaatgcatgaccttatgcatgatctagcacagttaatggtcgggaatgaatatgtcatagctgaagga |
208 |
Q |
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| T |
4529317 |
tgtagacgattgtggtgacatttgtaattgtaaaatgcatgaccttatgcatgatctagcacagctaatggtcgggaatgaatatgtcatggctgaagga |
4529416 |
T |
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| Q |
209 |
gaagaagcaaacattggaaataaaacacgttttttatcatctcataatgcattacagtttgcactgacat |
278 |
Q |
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| T |
4529417 |
gaagaagcaaacattggaaacaaaacacgttttttatcatctcataatgcattacagtttgcactgacat |
4529486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 9 - 251
Target Start/End: Complemental strand, 4398676 - 4398434
Alignment:
| Q |
9 |
aggggttcattcaacaatcaaatgatgttagacgcgtagaagatgttggccatgagtacttcatgagtttgctgtcaatgtccttctttcaggatatcat |
108 |
Q |
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| T |
4398676 |
aggggttcattcaacaatcaaatgatgttagacgtgtagaagatgttggtcatgagtacttcatgagtttgctgtcaatgtctttctttcgagatgttac |
4398577 |
T |
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| Q |
109 |
tgtagacgattatggtgacattagtaattgtagaatgcatgaccttatgcatgatctagcacagttaatggtcgggaatgaatatgtcatagctgaagga |
208 |
Q |
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| T |
4398576 |
tatagacgattgtggtggaataagtacctgtaaaatgcatgacattatgcattatctagcgcaagtagtgaccggggatgaatatgtcgtggttgaagga |
4398477 |
T |
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| Q |
209 |
gaagaagcaaacattggaaataaaacacgttttttatcatctc |
251 |
Q |
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| T |
4398476 |
gaagaactaaacattgaaaacaaaacacgttatttgtcatctc |
4398434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 9 - 251
Target Start/End: Original strand, 4497966 - 4498208
Alignment:
| Q |
9 |
aggggttcattcaacaatcaaatgatgttagacgcgtagaagatgttggccatgagtacttcatgagtttgctgtcaatgtccttctttcaggatatcat |
108 |
Q |
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| T |
4497966 |
aggggttcattcaacaatcaaatgatattagatgtgtagaagatgttggtcatgagtacttcatgagtttgctgtcaatgtctttctttcaagatgtttc |
4498065 |
T |
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| Q |
109 |
tgtagacgattatggtgacattagtaattgtagaatgcatgaccttatgcatgatctagcacagttaatggtcgggaatgaatatgtcatagctgaagga |
208 |
Q |
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| T |
4498066 |
tatagacgattgtggtggaataagtacctgtaaaatgcatgacattatgcatgatctagcgcaactagtgaccgggaatgaatatgtcgtggttgaagga |
4498165 |
T |
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| Q |
209 |
gaagaagcaaacattggaaataaaacacgttttttatcatctc |
251 |
Q |
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| T |
4498166 |
gaagaactaaacataggaaacagaacacgttatttgtcatctc |
4498208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 9 - 251
Target Start/End: Original strand, 4519026 - 4519268
Alignment:
| Q |
9 |
aggggttcattcaacaatcaaatgatgttagacgcgtagaagatgttggccatgagtacttcatgagtttgctgtcaatgtccttctttcaggatatcat |
108 |
Q |
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| T |
4519026 |
aggggttcgttcaacaatcaaatgatattagatgtgtagaagatattggtcatgagtacttcatgagtttgctgtcaatgtctttctttcaagatgttac |
4519125 |
T |
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| Q |
109 |
tgtagacgattatggtgacattagtaattgtagaatgcatgaccttatgcatgatctagcacagttaatggtcgggaatgaatatgtcatagctgaagga |
208 |
Q |
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| T |
4519126 |
tatagacgattgtgatggaataagcacctgtaaaatgcatgacattatgtatgatctagcgcaactagtgaccgagaatgaatatgtcgtggttgaagga |
4519225 |
T |
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| Q |
209 |
gaagaagcaaacattggaaataaaacacgttttttatcatctc |
251 |
Q |
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| T |
4519226 |
gaagaactaaacataggaaacagaacacgttatttgtcatctc |
4519268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 9 - 251
Target Start/End: Original strand, 18046650 - 18046892
Alignment:
| Q |
9 |
aggggttcattcaacaatcaaatgatgttagacgcgtagaagatgttggccatgagtacttcatgagtttgctgtcaatgtccttctttcaggatatcat |
108 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||| | | |
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| T |
18046650 |
aggggttcattcaacaatcaaatgatgttagacgtgtagaagatgttggtcatgagtacttcatgagtttgctgtcaatgtctttctttcgagatgttac |
18046749 |
T |
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| Q |
109 |
tgtagacgattatggtgacattagtaattgtagaatgcatgaccttatgcatgatctagcacagttaatggtcgggaatgaatatgtcatagctgaagga |
208 |
Q |
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| T |
18046750 |
tatagacgattgtggtggaataagtacctgtaaaatgcatgacattatgcattatctagcgcaagtagtgaccggggatgaatatgtcgtggttgaagga |
18046849 |
T |
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| Q |
209 |
gaagaagcaaacattggaaataaaacacgttttttatcatctc |
251 |
Q |
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| T |
18046850 |
gaagaactaaacattgaaaacaaaacacgttatttgtcatctc |
18046892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 9 - 251
Target Start/End: Complemental strand, 18034503 - 18034261
Alignment:
| Q |
9 |
aggggttcattcaacaatcaaatgatgttagacgcgtagaagatgttggccatgagtacttcatgagtttgctgtcaatgtccttctttcaggatatcat |
108 |
Q |
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|||||||| ||||||||||||||||| ||||| | ||||||||| |||| |||||||||||||||||||||||||||||||| |||||||| ||| | | |
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| T |
18034503 |
aggggttcgttcaacaatcaaatgatattagatgtgtagaagatattggtcatgagtacttcatgagtttgctgtcaatgtctttctttcaagatgttac |
18034404 |
T |
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| Q |
109 |
tgtagacgattatggtgacattagtaattgtagaatgcatgaccttatgcatgatctagcacagttaatggtcgggaatgaatatgtcatagctgaagga |
208 |
Q |
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| T |
18034403 |
tatagacgattgtgatggaataagcacctgtaaaatgcatgacattatgtatgatctagcgcaactagtgaccgagaatgaatatgtcgtggttgaagga |
18034304 |
T |
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| Q |
209 |
gaagaagcaaacattggaaataaaacacgttttttatcatctc |
251 |
Q |
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| T |
18034303 |
gaagaactaaacataggaaacagaacacgttatttgtcatctc |
18034261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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