View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2014_low_76 (Length: 276)

Name: NF2014_low_76
Description: NF2014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2014_low_76
NF2014_low_76
[»] chr4 (27 HSPs)
chr4 (66-261)||(55932845-55933036)
chr4 (1-43)||(2741125-2741167)
chr4 (1-43)||(36572073-36572115)
chr4 (1-43)||(50630815-50630857)
chr4 (1-42)||(54017656-54017697)
chr4 (4-43)||(50002483-50002522)
chr4 (4-43)||(54936253-54936292)
chr4 (1-43)||(3340861-3340903)
chr4 (1-43)||(4955377-4955419)
chr4 (1-43)||(22183324-22183366)
chr4 (1-43)||(25483390-25483432)
chr4 (1-43)||(31691206-31691248)
chr4 (1-43)||(36629291-36629333)
chr4 (1-43)||(41370411-41370453)
chr4 (5-43)||(49302964-49303002)
chr4 (1-43)||(49880214-49880256)
chr4 (1-43)||(52884941-52884983)
chr4 (1-43)||(55933184-55933226)
chr4 (1-42)||(18932810-18932851)
chr4 (3-43)||(36608721-36608761)
chr4 (1-41)||(43827494-43827534)
chr4 (1-37)||(54108967-54109003)
chr4 (1-43)||(1731707-1731749)
chr4 (1-43)||(3271841-3271883)
chr4 (1-43)||(22028021-22028063)
chr4 (1-43)||(39404452-39404494)
chr4 (3-43)||(2041137-2041177)
[»] chr7 (25 HSPs)
chr7 (1-43)||(11845245-11845287)
chr7 (1-43)||(36939795-36939837)
chr7 (1-43)||(37533426-37533468)
chr7 (1-43)||(1085678-1085720)
chr7 (1-43)||(7517634-7517676)
chr7 (1-43)||(19122785-19122827)
chr7 (1-43)||(22566724-22566766)
chr7 (1-43)||(29157619-29157661)
chr7 (1-42)||(16569250-16569291)
chr7 (1-42)||(16596371-16596412)
chr7 (1-43)||(23439-23481)
chr7 (1-43)||(6054614-6054656)
chr7 (1-43)||(30244324-30244366)
chr7 (1-43)||(36623014-36623056)
chr7 (1-43)||(37533072-37533114)
chr7 (1-42)||(22567102-22567143)
chr7 (1-43)||(7554079-7554121)
chr7 (1-35)||(28301613-28301647)
chr7 (1-43)||(30245131-30245173)
chr7 (1-43)||(30253546-30253588)
chr7 (1-43)||(40094836-40094878)
chr7 (1-43)||(40230353-40230395)
chr7 (1-43)||(47129149-47129191)
chr7 (1-42)||(24177489-24177530)
chr7 (3-43)||(1085310-1085350)
[»] scaffold0702 (1 HSPs)
scaffold0702 (1-43)||(576-618)
[»] chr6 (24 HSPs)
chr6 (1-43)||(1846802-1846844)
chr6 (1-43)||(2377808-2377850)
chr6 (1-43)||(10074053-10074095)
chr6 (1-43)||(35210258-35210300)
chr6 (2-42)||(3415513-3415553)
chr6 (1-43)||(2578505-2578547)
chr6 (1-43)||(3409313-3409355)
chr6 (1-43)||(10074425-10074467)
chr6 (1-43)||(16107732-16107774)
chr6 (1-43)||(16454629-16454671)
chr6 (1-43)||(29518557-29518599)
chr6 (1-43)||(29518974-29519016)
chr6 (1-43)||(32460642-32460684)
chr6 (1-43)||(32741233-32741275)
chr6 (1-42)||(2378180-2378221)
chr6 (1-38)||(16108117-16108154)
chr6 (1-43)||(1127414-1127456)
chr6 (1-43)||(2579554-2579596)
chr6 (1-43)||(2579934-2579976)
chr6 (1-43)||(3058280-3058322)
chr6 (1-43)||(16454961-16455003)
chr6 (1-43)||(26544103-26544145)
chr6 (1-34)||(3409714-3409747)
chr6 (15-43)||(21130119-21130147)
[»] chr5 (22 HSPs)
chr5 (1-43)||(18603182-18603224)
chr5 (1-43)||(26074666-26074708)
chr5 (1-43)||(26075224-26075266)
chr5 (1-43)||(41170688-41170730)
chr5 (2-43)||(32487448-32487489)
chr5 (1-44)||(11417038-11417081)
chr5 (1-43)||(3295406-3295448)
chr5 (1-43)||(9498716-9498758)
chr5 (1-43)||(15370153-15370195)
chr5 (1-43)||(15370456-15370498)
chr5 (1-43)||(40296377-40296419)
chr5 (3-42)||(42508668-42508707)
chr5 (1-43)||(3295077-3295119)
chr5 (1-43)||(6500504-6500546)
chr5 (1-43)||(13415822-13415864)
chr5 (1-43)||(25327989-25328031)
chr5 (1-43)||(26590972-26591014)
chr5 (1-43)||(34753087-34753129)
chr5 (1-43)||(35150061-35150102)
chr5 (1-42)||(6224250-6224291)
chr5 (1-42)||(27502099-27502140)
chr5 (7-43)||(26074208-26074244)
[»] chr3 (23 HSPs)
chr3 (1-43)||(32589757-32589799)
chr3 (1-43)||(41359827-41359869)
chr3 (1-43)||(42342450-42342492)
chr3 (1-43)||(1634376-1634418)
chr3 (1-43)||(12114624-12114666)
chr3 (5-43)||(22303721-22303759)
chr3 (1-43)||(22304017-22304059)
chr3 (1-43)||(22304623-22304665)
chr3 (1-43)||(29644964-29645006)
chr3 (1-43)||(35946576-35946618)
chr3 (1-37)||(9240203-9240239)
chr3 (1-43)||(15772908-15772950)
chr3 (1-43)||(29644643-29644685)
chr3 (1-43)||(32462962-32463004)
chr3 (1-43)||(33362355-33362397)
chr3 (1-43)||(37990701-37990743)
chr3 (1-43)||(39935017-39935059)
chr3 (1-43)||(42342152-42342194)
chr3 (1-43)||(43346853-43346895)
chr3 (1-43)||(52634730-52634771)
chr3 (2-39)||(33803318-33803355)
chr3 (2-43)||(47964580-47964621)
chr3 (10-43)||(50329394-50329427)
[»] chr2 (20 HSPs)
chr2 (1-43)||(14745729-14745771)
chr2 (1-43)||(15880317-15880359)
chr2 (1-43)||(36178667-36178709)
chr2 (1-43)||(28254299-28254341)
chr2 (1-43)||(36005942-36005984)
chr2 (1-43)||(37106242-37106284)
chr2 (1-42)||(5542688-5542729)
chr2 (1-42)||(41283538-41283579)
chr2 (4-43)||(14745356-14745395)
chr2 (1-43)||(962652-962694)
chr2 (1-43)||(15511557-15511599)
chr2 (1-43)||(31385791-31385833)
chr2 (1-43)||(33731702-33731744)
chr2 (1-43)||(37894754-37894796)
chr2 (1-43)||(38796682-38796724)
chr2 (1-43)||(42514703-42514745)
chr2 (1-42)||(6422164-6422205)
chr2 (1-42)||(6713030-6713071)
chr2 (5-42)||(16590941-16590978)
chr2 (11-43)||(29874085-29874117)
[»] chr1 (20 HSPs)
chr1 (1-43)||(17294631-17294673)
chr1 (1-43)||(44290520-44290562)
chr1 (1-43)||(44290887-44290929)
chr1 (1-41)||(41184489-41184529)
chr1 (1-43)||(14318921-14318963)
chr1 (1-43)||(34364979-34365021)
chr1 (1-43)||(41157429-41157471)
chr1 (1-43)||(41759537-41759579)
chr1 (1-42)||(3875394-3875435)
chr1 (1-42)||(41142426-41142467)
chr1 (1-41)||(41184152-41184192)
chr1 (1-43)||(66149-66191)
chr1 (1-43)||(3550774-3550816)
chr1 (1-43)||(5575158-5575200)
chr1 (1-43)||(22077172-22077214)
chr1 (1-43)||(26661584-26661626)
chr1 (1-39)||(29798253-29798291)
chr1 (1-43)||(32594778-32594820)
chr1 (1-43)||(41157045-41157087)
chr1 (1-43)||(48588550-48588592)
[»] scaffold0078 (1 HSPs)
scaffold0078 (1-43)||(5411-5453)
[»] chr8 (22 HSPs)
chr8 (1-43)||(3038352-3038394)
chr8 (1-43)||(9309033-9309075)
chr8 (1-43)||(9483249-9483291)
chr8 (1-43)||(30441139-30441181)
chr8 (1-42)||(70337-70378)
chr8 (1-42)||(5420705-5420746)
chr8 (1-44)||(9482665-9482708)
chr8 (1-43)||(3669741-3669783)
chr8 (5-43)||(6731953-6731991)
chr8 (1-43)||(8918826-8918868)
chr8 (1-43)||(9507836-9507878)
chr8 (1-43)||(20870635-20870677)
chr8 (1-43)||(25561878-25561920)
chr8 (1-43)||(30359325-30359367)
chr8 (1-43)||(33113429-33113471)
chr8 (1-43)||(34835263-34835305)
chr8 (1-43)||(34835529-34835571)
chr8 (1-43)||(34835795-34835837)
chr8 (1-43)||(37544552-37544594)
chr8 (1-43)||(43274841-43274883)
chr8 (1-43)||(45122678-45122720)
chr8 (7-43)||(32640594-32640630)
[»] scaffold0391 (1 HSPs)
scaffold0391 (1-42)||(1754-1795)
[»] scaffold0734 (1 HSPs)
scaffold0734 (1-37)||(5831-5867)
[»] scaffold0171 (1 HSPs)
scaffold0171 (4-42)||(17519-17557)


Alignment Details
Target: chr4 (Bit Score: 171; Significance: 7e-92; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 66 - 261
Target Start/End: Complemental strand, 55933036 - 55932845
Alignment:
Q  66 tctatacaaaaacctagctaattggcaatgacagttttgccagcatcaaacgactagttgtttaaagttttcacagctcatgatgcacatctaagcgcat 165  Q
    ||||||||||||||||||||||||||||||||| ||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55933036 tctatacaaaaacctagctaattggcaatgacaattttgc----atcaaacgactagttgtttaaagttttcacagctcatgatgcacatctaagcgcat 55932941  T
Q  166 tattggggggttgttttgaatatgattggaaagtgtccctttgtgtatgcttctttccaaatcaaattgatcatagaaaagtggtgccatggtttg 261  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55932940 tattggggggtagttttgaatatgattggaaagtgtccctttgtgtatgcttctttccaaatcaaattgatcatagaaaagtggtgccatggtttg 55932845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 2741125 - 2741167
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  2741125 ttataagtaagaggacccataactccattgccttaaggttttg 2741167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 36572073 - 36572115
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  36572073 ttataagtaagaagacccataaatccattgccttaaggttttg 36572115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 50630857 - 50630815
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  50630857 ttataagtaagaggacccataaacccattgccttaaggttttg 50630815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 54017697 - 54017656
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggtttt 42  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  54017697 ttataagtaagaggacccataaacccattgccttaaggtttt 54017656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 50002483 - 50002522
Alignment:
Q  4 taagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  50002483 taagtaagaggacccataaatccattgtcttaaggttttg 50002522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 54936253 - 54936292
Alignment:
Q  4 taagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  54936253 taagtaagaggacccataaacccattgccttaaggttttg 54936292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 3340861 - 3340903
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| ||| |||||||||||||||    
T  3340861 ttataagtaagaggacccataaacccactgccttaaggttttg 3340903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 4955419 - 4955377
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||||||| |||||| |||||||||||||||||||    
T  4955419 ttataagtaagaggactcataaacccattgccttaaggttttg 4955377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 22183366 - 22183324
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||| |||||||||||| |||||||||||||||||||    
T  22183366 ttataagtaaaaggacccataaacccattgccttaaggttttg 22183324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 25483390 - 25483432
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||| ||||||| |||||||||||||||||||    
T  25483390 ttataagtaagaggatccataaacccattgccttaaggttttg 25483432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 31691206 - 31691248
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||||||||||||||  ||||||||||||||||||    
T  31691206 ttataagtaagaggacccataaactcattgccttaaggttttg 31691248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 36629291 - 36629333
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||||||||||||||  ||||||||||||||||||    
T  36629291 ttataagtaagaggacccataaactcattgccttaaggttttg 36629333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 41370411 - 41370453
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| |||||||||||| ||||||    
T  41370411 ttataagtaagaggacccataaacccattgccttaaagttttg 41370453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 49302964 - 49303002
Alignment:
Q  5 aagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  49302964 aagtaagaggacccataaacccattgccttaaggttttg 49303002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 49880214 - 49880256
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| ||| |||||||||||||||    
T  49880214 ttataagtaagaggacccataaacccactgccttaaggttttg 49880256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 52884941 - 52884983
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||| ||||||| |||||||||||||||||||    
T  52884941 ttataagtaagaggatccataaacccattgccttaaggttttg 52884983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 55933226 - 55933184
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| |||||||||||| ||||||    
T  55933226 ttataagtaagaggacccataaacccattgccttaaagttttg 55933184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 18932851 - 18932810
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggtttt 42  Q
    |||||| |||||||||||||||| ||||||||||||||||||    
T  18932851 ttataaataagaggacccataaacccattgccttaaggtttt 18932810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 36608761 - 36608721
Alignment:
Q  3 ataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||| |||||||||||||| ||||||||||||    
T  36608761 ataagtaagaggatccataaatccattgtcttaaggttttg 36608721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 43827494 - 43827534
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttt 41  Q
    |||||| ||||||||||||||||| ||||||||||||||||    
T  43827494 ttataaataagaggacccataaattcattgccttaaggttt 43827534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 54108967 - 54109003
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaag 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  54108967 ttataagtaagaggacccataaacccattgccttaag 54109003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 1731749 - 1731707
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||| |||||||||||||||| | |||||||||||||||||    
T  1731749 ttataaataagaggacccataaaccaattgccttaaggttttg 1731707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 3271841 - 3271883
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||| ||||||||| | |||||||||||||||||    
T  3271841 ttataagtaagagaacccataaacctattgccttaaggttttg 3271883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 22028063 - 22028021
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||||||||||||||   |||||||||||||||||    
T  22028063 ttataagtaagaggacccataaacatattgccttaaggttttg 22028021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 39404452 - 39404494
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| | || ||||||||||||||    
T  39404452 ttataagtaagaggacccataaacctatagccttaaggttttg 39404494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 43
Target Start/End: Original strand, 2041137 - 2041177
Alignment:
Q  3 ataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||| ||| ||||| ||||||||||||||||||||||||    
T  2041137 ataagtgagatgacccgtaaatccattgccttaaggttttg 2041177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 11845245 - 11845287
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  11845245 ttataagtaagaggacccataaatccattgccttaaggttttg 11845287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 36939837 - 36939795
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  36939837 ttataagtaagaggacccataaatccattgccttaaggttttg 36939795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 37533468 - 37533426
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  37533468 ttataagtaagaggacccataaatccattgccttaaggttttg 37533426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 1085720 - 1085678
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  1085720 ttataagtaagaggacccataaacccattgccttaaggttttg 1085678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 7517634 - 7517676
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  7517634 ttataagtaagaggacccataaacccattgccttaaggttttg 7517676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 19122785 - 19122827
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  19122785 ttataagtaagaggactcataaatccattgccttaaggttttg 19122827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 22566766 - 22566724
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  22566766 ttataagtaagaggacccataaacccattgccttaaggttttg 22566724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 29157619 - 29157661
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  29157619 ttataagtaagacgacccataaatccattgccttaaggttttg 29157661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 16569250 - 16569291
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggtttt 42  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  16569250 ttataagtaagaggacccataaacccattgccttaaggtttt 16569291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 16596412 - 16596371
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggtttt 42  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  16596412 ttataagtaagaggacccataaacccattgccttaaggtttt 16596371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 23481 - 23439
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| | |||||||||||||||||    
T  23481 ttataagtaagaggacccataaacctattgccttaaggttttg 23439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 6054614 - 6054656
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||||||||||||||  ||||||||||||||||||    
T  6054614 ttataagtaagaggacccataaacacattgccttaaggttttg 6054656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 30244324 - 30244366
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||||||| |||||| |||||||||||||||||||    
T  30244324 ttataagtaagaggactcataaacccattgccttaaggttttg 30244366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 36623014 - 36623056
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||| ||||| |||||||||||||||||||||||||||    
T  36623014 ttataagtaggaggatccataaatccattgccttaaggttttg 36623056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 37533114 - 37533072
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||||||||||||||  ||||||||||||||||||    
T  37533114 ttataagtaagaggacccataaactcattgccttaaggttttg 37533072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 22567143 - 22567102
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggtttt 42  Q
    |||||||||||||||||||||||  |||||||||||||||||    
T  22567143 ttataagtaagaggacccataaactcattgccttaaggtttt 22567102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 7554079 - 7554121
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||| ||||||| |||| ||||||||||||||    
T  7554079 ttataagtaagaggatccataaacccatagccttaaggttttg 7554121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 28301647 - 28301613
Alignment:
Q  1 ttataagtaagaggacccataaatccattgcctta 35  Q
    ||||||||||||||||||||||| |||||||||||    
T  28301647 ttataagtaagaggacccataaacccattgcctta 28301613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 30245131 - 30245173
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||| ||||||||||  ||||||||||||||||||    
T  30245131 ttataagtaagacgacccataaactcattgccttaaggttttg 30245173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 30253546 - 30253588
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||| |||||||||  ||||||||||||||||||    
T  30253546 ttataagtaagagaacccataaactcattgccttaaggttttg 30253588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 40094878 - 40094836
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| |||| | ||||||||||||    
T  40094878 ttataagtaagaggacccataaacccatcgtcttaaggttttg 40094836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 40230395 - 40230353
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| |||| | ||||||||||||    
T  40230395 ttataagtaagaggacccataaacccatagtcttaaggttttg 40230353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 47129149 - 47129191
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| |||| || |||||||||||    
T  47129149 ttataagtaagaggacccataaacccatcgctttaaggttttg 47129191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 24177489 - 24177530
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggtttt 42  Q
    ||||||||||| ||||||||||| |||||||||||| |||||    
T  24177489 ttataagtaagcggacccataaacccattgccttaaagtttt 24177530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 1085350 - 1085310
Alignment:
Q  3 ataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||| |||||||||  ||||||||||||||||||    
T  1085350 ataagtaagagaacccataaactcattgccttaaggttttg 1085310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 618 - 576
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  618 ttataagtaagaggacccataaacccattgccttaaggttttg 576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 1846802 - 1846844
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  1846802 ttataagtaagagcacccataaatccattgccttaaggttttg 1846844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 2377808 - 2377850
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  2377808 ttataagtaagaggacccataaacccattgccttaaggttttg 2377850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 10074095 - 10074053
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  10074095 ttataagtaagaggacccataaacccattgccttaaggttttg 10074053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 35210258 - 35210300
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  35210258 ttataagtaagaggacccataaaaccattgccttaaggttttg 35210300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 3415513 - 3415553
Alignment:
Q  2 tataagtaagaggacccataaatccattgccttaaggtttt 42  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  3415513 tataagtaagaggacccataaacccattgccttaaggtttt 3415553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 2578547 - 2578505
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| |||| ||||||||||||||    
T  2578547 ttataagtaagaggacccataaacccatagccttaaggttttg 2578505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 3409313 - 3409355
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||||||||||||||  ||||||||||||||||||    
T  3409313 ttataagtaagaggacccataaactcattgccttaaggttttg 3409355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 10074467 - 10074425
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||||||||||||||  ||||||||||||||||||    
T  10074467 ttataagtaagaggacccataaactcattgccttaaggttttg 10074425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 16107732 - 16107774
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||||||| |||||| |||||||||||||||||||    
T  16107732 ttataagtaagaggactcataaacccattgccttaaggttttg 16107774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 16454629 - 16454671
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| ||||||||||||| |||||    
T  16454629 ttataagtaagaggacccataaacccattgccttaagattttg 16454671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 29518557 - 29518599
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| ||||| |||||||||||||    
T  29518557 ttataagtaagaggacccataaacccattaccttaaggttttg 29518599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 29518974 - 29519016
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| ||||| |||||||||||||    
T  29518974 ttataagtaagaggacccataaacccattaccttaaggttttg 29519016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 32460684 - 32460642
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||||||| |||||| |||||||||||||||||||    
T  32460684 ttataagtaagaggactcataaacccattgccttaaggttttg 32460642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 32741233 - 32741275
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| ||||| |||||||||||||    
T  32741233 ttataagtaagaggacccataaacccattaccttaaggttttg 32741275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 2378180 - 2378221
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggtttt 42  Q
    ||||||||||||||||||||||| ||||| ||||||||||||    
T  2378180 ttataagtaagaggacccataaacccattaccttaaggtttt 2378221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 16108117 - 16108154
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaagg 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  16108117 ttataagtaagaggacccataaacccattgccttaagg 16108154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 1127414 - 1127456
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||||||| |||||| ||||| |||||||||||||    
T  1127414 ttataagtaagaggactcataaacccattaccttaaggttttg 1127456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 2579596 - 2579554
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||||| ||||||||  ||||||||||||||||||    
T  2579596 ttataagtaagagggcccataaactcattgccttaaggttttg 2579554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 2579976 - 2579934
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| |||  ||||||||||||||    
T  2579976 ttataagtaagaggacccataaacccacagccttaaggttttg 2579934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 3058280 - 3058322
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||| ||||| ||||||| |||||||||||||||||||    
T  3058280 ttataagtatgaggatccataaacccattgccttaaggttttg 3058322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 16454961 - 16455003
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||| |||||||||||| | |||||||||||||||||    
T  16454961 ttataagtaataggacccataaacctattgccttaaggttttg 16455003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 26544103 - 26544145
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| |||  ||||||||||||||    
T  26544103 ttataagtaagaggacccataaacccaccgccttaaggttttg 26544145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 3409714 - 3409747
Alignment:
Q  1 ttataagtaagaggacccataaatccattgcctt 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  3409714 ttataagtaagaggacccataaacccattgcctt 3409747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 43
Target Start/End: Complemental strand, 21130147 - 21130119
Alignment:
Q  15 acccataaatccattgccttaaggttttg 43  Q
    |||||||||||||||||||||||||||||    
T  21130147 acccataaatccattgccttaaggttttg 21130119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 18603224 - 18603182
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  18603224 ttataagtaagaggacccataaacccattgccttaaggttttg 18603182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 26074666 - 26074708
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  26074666 ttataagtaagaggacccataaacccattgccttaaggttttg 26074708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 26075266 - 26075224
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  26075266 ttataagtaagaggacccataaacccattgccttaaggttttg 26075224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 41170688 - 41170730
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  41170688 ttataagtaagaggacccataaacccattgccttaaggttttg 41170730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 32487448 - 32487489
Alignment:
Q  2 tataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  32487448 tataagtaagaggacccataaacccattgccttaaggttttg 32487489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 11417081 - 11417038
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttgt 44  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||    
T  11417081 ttataagtaagaggatccataaacccattgccttaaggttttgt 11417038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 3295448 - 3295406
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| | |||||||||||||||||    
T  3295448 ttataagtaagaggacccataaaccaattgccttaaggttttg 3295406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 9498758 - 9498716
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| ||||||||||||| |||||    
T  9498758 ttataagtaagaggacccataaacccattgccttaagattttg 9498716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 15370153 - 15370195
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||||||||||||||||||  ||||||||||||||    
T  15370153 ttataagtaagaggacccataaatccacagccttaaggttttg 15370195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 15370456 - 15370498
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| |||| ||||||||||||||    
T  15370456 ttataagtaagaggacccataaacccatagccttaaggttttg 15370498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 40296419 - 40296377
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| |||||||||| ||||||||    
T  40296419 ttataagtaagaggacccataaacccattgccttgaggttttg 40296377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 42508668 - 42508707
Alignment:
Q  3 ataagtaagaggacccataaatccattgccttaaggtttt 42  Q
    |||||||||||||| |||||| ||||||||||||||||||    
T  42508668 ataagtaagaggactcataaacccattgccttaaggtttt 42508707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 3295119 - 3295077
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||| |||||||||| |||||||||| ||||||||    
T  3295119 ttataagtaagaagacccataaacccattgccttgaggttttg 3295077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 6500504 - 6500546
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||||||||  |||| |||||||||||||||||||    
T  6500504 ttataagtaagaggacctttaaacccattgccttaaggttttg 6500546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 13415864 - 13415822
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| | ||| |||||||||||||    
T  13415864 ttataagtaagaggacccataaacctattaccttaaggttttg 13415822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 25327989 - 25328031
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| | | |||||||||||||||    
T  25327989 ttataagtaagaggacccataaacctaatgccttaaggttttg 25328031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 26591014 - 26590972
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||| |||||||| || |||||||||||||||    
T  26591014 ttataagtaagaggatccataaattcaatgccttaaggttttg 26590972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 34753129 - 34753087
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||| |||||||||| | |||||||||||||||||    
T  34753129 ttataagtaagaagacccataaaccgattgccttaaggttttg 34753087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 35150061 - 35150102
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||| |||||||||||||||| ||||||||||||    
T  35150061 ttataagtaagag-acccataaatccattgtcttaaggttttg 35150102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 6224250 - 6224291
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggtttt 42  Q
    |||||||||||||||||||||||  ||| |||||||||||||    
T  6224250 ttataagtaagaggacccataaactcatcgccttaaggtttt 6224291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 27502140 - 27502099
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggtttt 42  Q
    ||||||||||||||||||||||| | ||||||||||| ||||    
T  27502140 ttataagtaagaggacccataaacctattgccttaagatttt 27502099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 26074244 - 26074208
Alignment:
Q  7 gtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||||| || |||||||||||||||||||    
T  26074244 gtaagaggacccatgaacccattgccttaaggttttg 26074208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 32589757 - 32589799
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  32589757 ttataagtaagaggacccataaacccattgccttaaggttttg 32589799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 41359869 - 41359827
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  41359869 ttataagtaagaggacccataaacccattgccttaaggttttg 41359827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 42342492 - 42342450
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  42342492 ttataagtaagaggacccataaatccattgtcttaaggttttg 42342450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 1634418 - 1634376
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| |||||| ||||||||||||    
T  1634418 ttataagtaagaggacccataaacccattggcttaaggttttg 1634376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 12114666 - 12114624
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| |||||| ||||||||||||    
T  12114666 ttataagtaagaggacccataaacccattgtcttaaggttttg 12114624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 22303759 - 22303721
Alignment:
Q  5 aagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  22303759 aagtaagaggacccataaacccattgccttaaggttttg 22303721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 22304059 - 22304017
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||| ||||||||||| |||||||||||||||||||    
T  22304059 ttataagtaagcggacccataaacccattgccttaaggttttg 22304017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 22304623 - 22304665
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||||||||||||||  ||||||||||||||||||    
T  22304623 ttataagtaagaggacccataaacacattgccttaaggttttg 22304665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 29645006 - 29644964
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| |||||| ||||||||||||    
T  29645006 ttataagtaagaggacccataaacccattgtcttaaggttttg 29644964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 35946576 - 35946618
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| || ||||||||||||||||    
T  35946576 ttataagtaagaggacccataaacccgttgccttaaggttttg 35946618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 9240203 - 9240239
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaag 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  9240203 ttataagtaagaggacccataaatccattaccttaag 9240239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 15772908 - 15772950
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||||||||||||||  |||||| |||||||||||    
T  15772908 ttataagtaagaggacccataaactcattgctttaaggttttg 15772950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 29644685 - 29644643
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||| ||||||||| |||||| ||||||||||||    
T  29644685 ttataagtaagagaacccataaacccattgtcttaaggttttg 29644643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 32463004 - 32462962
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||| ||| |||||| |||||||||||||||||||    
T  32463004 ttataagtaagaagactcataaacccattgccttaaggttttg 32462962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 33362397 - 33362355
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| ||||| ||||||| |||||    
T  33362397 ttataagtaagaggacccataaacccatttccttaagattttg 33362355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 37990743 - 37990701
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||||||| ||||||  ||||||||||||||||||    
T  37990743 ttataagtaagaggactcataaactcattgccttaaggttttg 37990701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 39935059 - 39935017
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||| ||||||| |||||||||||| ||||||    
T  39935059 ttataagtaagaggatccataaacccattgccttaaagttttg 39935017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 42342194 - 42342152
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||||||| ||||||  ||||||||||||||||||    
T  42342194 ttataagtaagaggactcataaactcattgccttaaggttttg 42342152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 43346895 - 43346853
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||| |||||||||  ||||||||||||||||||    
T  43346895 ttataagtaagagaacccataaactcattgccttaaggttttg 43346853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 52634730 - 52634771
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||| ||||||||| |||||||||||||||||||    
T  52634730 ttataagtaagag-acccataaacccattgccttaaggttttg 52634771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 33803355 - 33803318
Alignment:
Q  2 tataagtaagaggacccataaatccattgccttaaggt 39  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  33803355 tataagtaagaggacccataaacccattgcattaaggt 33803318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 47964621 - 47964580
Alignment:
Q  2 tataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||| |||||||||||||| | |||||||||||||||||    
T  47964621 tataagtgagaggacccataaacctattgccttaaggttttg 47964580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 50329427 - 50329394
Alignment:
Q  10 agaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||||||||| |||||||||||||||    
T  50329427 agaggacccataaatccaatgccttaaggttttg 50329394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 14745771 - 14745729
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  14745771 ttataagtaagaggacccataaacccattgccttaaggttttg 14745729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 15880317 - 15880359
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  15880317 ttataagtaagaggacccataaacccattgccttaaggttttg 15880359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 36178709 - 36178667
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  36178709 ttataagtaagaggacccataaacccattgccttaaggttttg 36178667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 28254341 - 28254299
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||||||||||||||  ||||||||||||||||||    
T  28254341 ttataagtaagaggacccataaactcattgccttaaggttttg 28254299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 36005984 - 36005942
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||||||||||||||  ||||||||||||||||||    
T  36005984 ttataagtaagaggacccataaactcattgccttaaggttttg 36005942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 37106242 - 37106284
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| ||||| |||||||||||||    
T  37106242 ttataagtaagaggacccataaacccatttccttaaggttttg 37106284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 5542729 - 5542688
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggtttt 42  Q
    ||||||||||||||||||||||| | ||||||||||||||||    
T  5542729 ttataagtaagaggacccataaacctattgccttaaggtttt 5542688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 41283579 - 41283538
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggtttt 42  Q
    |||||||||||||||||||||||  |||||||||||||||||    
T  41283579 ttataagtaagaggacccataaactcattgccttaaggtttt 41283538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 14745395 - 14745356
Alignment:
Q  4 taagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||| ||||||||||||| |||||||||||||||||||    
T  14745395 taagtatgaggacccataaacccattgccttaaggttttg 14745356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 962652 - 962694
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||| |||||||||||||| |||||| ||||||||||||    
T  962652 ttataagtgagaggacccataaacccattgtcttaaggttttg 962694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 15511599 - 15511557
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| |||||| |||||| |||||    
T  15511599 ttataagtaagaggacccataaacccattgtcttaagattttg 15511557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 31385791 - 31385833
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||| | |||||||||||| |||||||||||||||||||    
T  31385791 ttataagtgaaaggacccataaacccattgccttaaggttttg 31385833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 33731702 - 33731744
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||| ||||||| | |||||||||||||||||    
T  33731702 ttataagtaagaggatccataaacctattgccttaaggttttg 33731744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 37894796 - 37894754
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||| ||| |||||||||||||||||||| |||||    
T  37894796 ttataagtaagaagactcataaatccattgccttaagattttg 37894754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 38796724 - 38796682
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| | | |||||||||||||||    
T  38796724 ttataagtaagaggacccataaacctaatgccttaaggttttg 38796682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 42514703 - 42514745
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| |||| |||||||| |||||    
T  42514703 ttataagtaagaggacccataaacccatcgccttaagattttg 42514745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 6422164 - 6422205
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggtttt 42  Q
    |||||| |||||||||||||||| |||| |||||||||||||    
T  6422164 ttataattaagaggacccataaacccatagccttaaggtttt 6422205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 6713030 - 6713071
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggtttt 42  Q
    ||||||||||||||||||||||| | ||||| ||||||||||    
T  6713030 ttataagtaagaggacccataaacctattgctttaaggtttt 6713071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 16590941 - 16590978
Alignment:
Q  5 aagtaagaggacccataaatccattgccttaaggtttt 42  Q
    |||||||||||||||||||  |||||||||||||||||    
T  16590941 aagtaagaggacccataaacacattgccttaaggtttt 16590978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 29874117 - 29874085
Alignment:
Q  11 gaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||| |||||||||||||||||||    
T  29874117 gaggacccataaacccattgccttaaggttttg 29874085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 17294631 - 17294673
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  17294631 ttataagtaagaggacccataaacccattgccttaaggttttg 17294673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 44290562 - 44290520
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  44290562 ttataagtaagaggacccataaacccattgccttaaggttttg 44290520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 44290929 - 44290887
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  44290929 ttataagtaagaggacccataaacccattgccttaaggttttg 44290887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 41184529 - 41184489
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttt 41  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  41184529 ttataagtaagaggacccataaacccattgccttaaggttt 41184489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 14318921 - 14318963
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||| |||||||||||| |||||||||||||||||    
T  14318921 ttataagtaagaagacccataaatctattgccttaaggttttg 14318963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 34364979 - 34365021
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| |||| ||||||||||||||    
T  34364979 ttataagtaagaggacccataaacccatagccttaaggttttg 34365021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 41157429 - 41157471
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| |||||||||| ||||||||    
T  41157429 ttataagtaagaggacccataaacccattgcctttaggttttg 41157471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 41759537 - 41759579
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||| || |||||||||||||||||||||||||||    
T  41759537 ttataagtaagatgatccataaatccattgccttaaggttttg 41759579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 3875435 - 3875394
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggtttt 42  Q
    |||||||||||||||| |||||| ||||||||||||||||||    
T  3875435 ttataagtaagaggactcataaacccattgccttaaggtttt 3875394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 41142426 - 41142467
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggtttt 42  Q
    |||||||||| |||||||||||| ||||||||||||||||||    
T  41142426 ttataagtaaaaggacccataaacccattgccttaaggtttt 41142467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 41184192 - 41184152
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttt 41  Q
    ||||||||||||||| ||||||| |||||||||||||||||    
T  41184192 ttataagtaagaggatccataaacccattgccttaaggttt 41184152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 66191 - 66149
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| | || ||||||||||||||    
T  66191 ttataagtaagaggacccataaacctatggccttaaggttttg 66149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 3550774 - 3550816
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||||||| |||||| |||||||||||| ||||||    
T  3550774 ttataagtaagaggactcataaacccattgccttaaagttttg 3550816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 5575158 - 5575200
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||| |||||||||| || |||||||||||    
T  5575158 ttataagtaagaggacctataaatccatagctttaaggttttg 5575200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 22077214 - 22077172
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||||||||||||||  ||||||| ||||||||||    
T  22077214 ttataagtaagaggacccataaactcattgccctaaggttttg 22077172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 26661626 - 26661584
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||| ||||||||||||||  ||||||||||||||||||    
T  26661626 ttataagtgagaggacccataaactcattgccttaaggttttg 26661584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 29798253 - 29798291
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggt 39  Q
    |||||||||||||||| |||||| |||||||||||||||    
T  29798253 ttataagtaagaggactcataaacccattgccttaaggt 29798291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 32594820 - 32594778
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||||||||||||||  ||||| ||||||||||||    
T  32594820 ttataagtaagaggacccataaactcattgtcttaaggttttg 32594778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 41157045 - 41157087
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||||||||||||||  |||||| |||||||||||    
T  41157045 ttataagtaagaggacccataaactcattgctttaaggttttg 41157087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 48588592 - 48588550
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||| ||||| ||||| ||||||||||||||||||    
T  48588592 ttataagtaagaagacccgtaaattcattgccttaaggttttg 48588550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 5411 - 5453
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| ||||||||||||| |||||    
T  5411 ttataagtaagaggacccataaacccattgccttaagattttg 5453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 3038394 - 3038352
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||| |||||||||||| |||||||||||||||||||    
T  3038394 ttataagtaaaaggacccataaacccattgccttaaggttttg 3038352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 9309033 - 9309075
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| ||||||||| |||||||||    
T  9309033 ttataagtaagaggacccataaacccattgcctaaaggttttg 9309075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 9483291 - 9483249
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| |||||| ||||||||||||    
T  9483291 ttataagtaagaggacccataaacccattgtcttaaggttttg 9483249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 30441139 - 30441181
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||||| |||||||| |||||||||||||||||||    
T  30441139 ttataagtaagagggcccataaacccattgccttaaggttttg 30441181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 70378 - 70337
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggtttt 42  Q
    ||||||||||||||||||||||| ||| ||||||||||||||    
T  70378 ttataagtaagaggacccataaacccactgccttaaggtttt 70337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 5420705 - 5420746
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggtttt 42  Q
    |||||||||||||||| |||||| ||||||||||||||||||    
T  5420705 ttataagtaagaggactcataaacccattgccttaaggtttt 5420746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 9482708 - 9482665
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttgt 44  Q
    ||||||||||||||||||||||| ||||||||| ||| ||||||    
T  9482708 ttataagtaagaggacccataaacccattgcctaaagattttgt 9482665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 3669741 - 3669783
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||||||| ||||||  ||||||||||||||||||    
T  3669741 ttataagtaagaggactcataaactcattgccttaaggttttg 3669783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 6731953 - 6731991
Alignment:
Q  5 aagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||| |||||||||| ||||||||||||||||||    
T  6731953 aagtaagagaacccataaattcattgccttaaggttttg 6731991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 8918868 - 8918826
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| | |||| ||||||||||||    
T  8918868 ttataagtaagaggacccataaacctattgacttaaggttttg 8918826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 9507836 - 9507878
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||||||| |||||| ||||| |||||||||||||    
T  9507836 ttataagtaagaggactcataaacccattaccttaaggttttg 9507878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 20870677 - 20870635
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| ||| ||||||||| |||||    
T  20870677 ttataagtaagaggacccataaacccactgccttaagattttg 20870635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 25561920 - 25561878
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||||||||||||||  ||||| ||||||||||||    
T  25561920 ttataagtaagaggacccataaactcattgtcttaaggttttg 25561878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 30359325 - 30359367
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||| ||||||||||||||| |||| ||||||||||||||    
T  30359325 ttataagcaagaggacccataaacccatagccttaaggttttg 30359367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 33113471 - 33113429
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||||||||||||||  |||||||||||| |||||    
T  33113471 ttataagtaagaggacccataaactcattgccttaagattttg 33113429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 34835263 - 34835305
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||||||||||||||  ||||||||||| ||||||    
T  34835263 ttataagtaagaggacccataaactcattgccttaaagttttg 34835305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 34835529 - 34835571
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||||||||||||||  ||||||||||| ||||||    
T  34835529 ttataagtaagaggacccataaactcattgccttaaagttttg 34835571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 34835795 - 34835837
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||||||||||||||  ||||||||||| ||||||    
T  34835795 ttataagtaagaggacccataaactcattgccttaaagttttg 34835837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 37544594 - 37544552
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||| ||||||||||||||||||||| | |||||||||||    
T  37544594 ttataagaaagaggacccataaatccattactttaaggttttg 37544552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 43274883 - 43274841
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||||||||||||||| | |||| ||||||||||||    
T  43274883 ttataagtaagaggacccataaacctattgtcttaaggttttg 43274841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 45122678 - 45122720
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggttttg 43  Q
    |||||||||||||||||||||||  ||||| ||||||||||||    
T  45122678 ttataagtaagaggacccataaactcattgtcttaaggttttg 45122720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 32640630 - 32640594
Alignment:
Q  7 gtaagaggacccataaatccattgccttaaggttttg 43  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  32640630 gtaagaggaccgataaacccattgccttaaggttttg 32640594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 1795 - 1754
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaaggtttt 42  Q
    |||||||| |||||||||||||| ||||||||||||||||||    
T  1795 ttataagtgagaggacccataaacccattgccttaaggtttt 1754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0734 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0734
Description:

Target: scaffold0734; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 5831 - 5867
Alignment:
Q  1 ttataagtaagaggacccataaatccattgccttaag 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  5831 ttataagtaagaggacccataaacccattgccttaag 5867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 17557 - 17519
Alignment:
Q  4 taagtaagaggacccataaatccattgccttaaggtttt 42  Q
    |||||||||||||||||||| |||| |||||||||||||    
T  17557 taagtaagaggacccataaacccatagccttaaggtttt 17519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University